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Package 36/208OSArchBUILDCHECKBUILD BIN

BSgenome

1.3.7

H. Pages
Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 10.1) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Windows Server 2003 x86_64 OK [ OK ] OK 
Windows Server 2003 NA OK  ERROR  OK 
Mac OS X (10.4.6) i686 OK  ERROR 
Package: BSgenome
Version: 1.3.7
Command: D:\biocbld\2.0d\R\bin\R.exe CMD check BSgenome_1.3.7.tar.gz
RetCode: 0
Time: 62.5 seconds
Status: OK
CheckDir: BSgenome.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/2.0d/Rpacks/BSgenome.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'BSgenome/DESCRIPTION' ... OK
* this is package 'BSgenome' version '1.3.7'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BSgenome' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating BSgenome-Ex.R ... OK
* checking examples ... OK
* creating BSgenome-manual.tex ... OK
* checking BSgenome-manual.tex ... OK

BSgenome.Rcheck/00install.out:

installing R.css in D:/biocbld/2.0d/Rpacks/BSgenome.Rcheck


---------- Making package BSgenome ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: Biostrings
Creating a new generic function for "names" in "BSgenome"
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'BSgenome'
     Formats: text html latex example chm 
  BSgenome-class                    text    html    latex   example chm
  available.genomes                 text    html    latex   example chm
  buildDataFiles                    text    html    latex   example chm
  getSeq                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\2.0d\Rpacks\BSgenome.Rcheck\00_pkg_src\BSgenome\chm\BSgenome.chm


Compile time: 0 minutes, 0 seconds
5	Topics
32	Local links
0	Internet links
1	Graphic


Created d:\biocbld\2.0d\Rpacks\BSgenome.Rcheck\00_pkg_src\BSgenome\chm\BSgenome.chm, 22,757 bytes
Compression decreased file by 2,053 bytes.
  adding MD5 sums

* DONE (BSgenome)