Back to the "Multiple platform build/check report"

Package 105/208OSArchBUILDCHECKBUILD BIN

LPEP

0.0.4

HyungJun Cho
Linux (SUSE 9.2) x86_64[ ERROR ]skipped
Linux (SUSE 10.1) x86_64 ERROR skipped
Linux (SUSE 9.2) i686 ERROR skipped
Solaris 2.9 sparc ERROR skipped
Windows Server 2003 x86_64 ERROR skippedskipped
Windows Server 2003 NA ERROR skippedskipped
Mac OS X (10.4.6) i686 ERROR skipped
Package: LPEP
Version: 0.0.4
Command: /loc/biocbuild/2.0d/R/bin/R CMD build LPEP
RetCode: 1
Time: 6.8 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'LPEP/DESCRIPTION' ... OK
* preparing 'LPEP':
* checking DESCRIPTION meta-information ... OK
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'LPEP' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'LPEP'
     Formats: text html latex example 
  am.trans.paired                   text    html    latex
  base.error.paired                 text    html    latex
  base.error.step1                  text    html    latex
  base.error.step2                  text    html    latex
  hd                                text    html    latex
  lowess.normal                     text    html    latex
  lpe.paired                        text    html    latex   example
  lpep.preproc                      text    html    latex   example
  n.genes.adaptive.interval         text    html    latex
  platelet                          text    html    latex
  quant.normal                      text    html    latex
  quant.normal2                     text    html    latex
** building package indices ...
* DONE (LPEP)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: LPE

Error:  chunk 1 (label=nameOfChung) 
Error in lpe.paired(x, design, q = 0.1, probe.ID = 1:nrow(x), min.probes.int = 10,  : 
	unused argument(s) (min.probes.int = 10, max.probes.int = 50)
Error in buildVignettes(dir = ".") : Error:  chunk 1 (label=nameOfChung) 
Error in lpe.paired(x, design, q = 0.1, probe.ID = 1:nrow(x), min.probes.int = 10,  : 
	unused argument(s) (min.probes.int = 10, max.probes.int = 50)
Execution halted