Package: EBImage

Version: 1.5.007

Command: /loc/biocbuild/2.0d/R/bin/R CMD build EBImage

RetCode: 1

Time: 30.4 seconds

Status: ERROR

PackageFile: None

* checking for file 'EBImage/DESCRIPTION' ... OK
* preparing 'EBImage':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'EBImage' ...
checking for Magick++-config... yes
ImageMagick version 6.0.7 found
checking for Magick++-config... yes
ImageMagick++ includes located in -I/usr/include
checking for pkg-config... yes
Compiling with GTK+ support
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -DUSEGTK -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/usr/X11R6/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -I/usr/include -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c alg_watershed.cpp -o alg_watershed.o
alg_watershed.cpp: In function `SEXPREC* ws_objects(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
alg_watershed.cpp:159: warning: comparison between signed and unsigned integer expressions
alg_watershed.cpp:182: warning: comparison between signed and unsigned integer expressions
alg_watershed.cpp: In function `void doWatershed(double*, Point&, double, double, std::vector >&, double)':
alg_watershed.cpp:698: warning: unused variable `int nnghb'
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -DUSEGTK -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/usr/X11R6/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -I/usr/include -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c colors.cpp -o colors.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -DUSEGTK -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/usr/X11R6/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -I/usr/include -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c common.cpp -o common.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -DUSEGTK -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/usr/X11R6/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -I/usr/include -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c conversions.cpp -o conversions.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -DUSEGTK -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/usr/X11R6/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -I/usr/include -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c display.cpp -o display.o
display.cpp: In function `void mage_gtkDisplay(SEXPREC*)':
display.cpp:62: warning: unused variable `InputHandler*hdlr'
display.cpp: In function `void theGtkDisplay(SEXPREC*)':
display.cpp:100: warning: unused variable `InputHandler*hdlr'
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -DUSEGTK -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/usr/X11R6/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -I/usr/include -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c drawables.cpp -o drawables.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -DUSEGTK -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/usr/X11R6/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -I/usr/include -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c flt_distmap.cpp -o flt_distmap.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -DUSEGTK -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/usr/X11R6/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -I/usr/include -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c flt_magick.cpp -o flt_magick.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -DUSEGTK -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/usr/X11R6/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -I/usr/include -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c flt_morph.cpp -o flt_morph.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -DUSEGTK -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/usr/X11R6/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -I/usr/include -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c flt_normalize.cpp -o flt_normalize.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -DUSEGTK -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/usr/X11R6/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -I/usr/include -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c flt_thresh.cpp -o flt_thresh.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -DUSEGTK -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/opt/gnome/include/gtk-2.0 -I/opt/gnome/lib64/gtk-2.0/include -I/usr/X11R6/include -I/opt/gnome/include/atk-1.0 -I/opt/gnome/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib64/glib-2.0/include   -I/usr/include -O2 -fmessage-length=0 -Wall -pthread  -fpic  -g -O2 -Wall -c indexing.cpp -o indexing.o
indexing.cpp: In function `Point getpoint(const int&, const int&)':
indexing.cpp:25: error: call of overloaded `floor(int)' is ambiguous
/usr/include/bits/mathcalls.h:185: error: candidates are: double floor(double)
/usr/include/g++/cmath:342: error:                 long double std::floor(long double)
/usr/include/g++/cmath:334: error:                 float std::floor(float)
make: *** [indexing.o] Error 1
chmod: cannot access `/tmp/Rinst2332064329/EBImage/libs/*': No such file or directory
ERROR: compilation failed for package 'EBImage'
** Removing '/tmp/Rinst2332064329/EBImage'
 ERROR
Installation failed.
Removing '/tmp/Rinst2332064329'