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| Package 125/208 | OS | Arch | BUILD | CHECK | BUILD BIN |
mmgmos1.7.0Xuejun Liu | Linux (SUSE 9.2) | x86_64 | OK | ERROR | |
| Linux (SUSE 10.1) | x86_64 | OK | ERROR | ||
| Linux (SUSE 9.2) | i686 | OK | ERROR | ||
| Solaris 2.9 | sparc | OK | ERROR | ||
| Windows Server 2003 | x86_64 | OK | ERROR | OK | |
| Windows Server 2003 | NA | OK | ERROR | OK | |
| Mac OS X (10.4.6) | i686 | OK | [ ERROR ] |
| Package: mmgmos |
| Version: 1.7.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check mmgmos_1.7.0.tar.gz |
| RetCode: 1 |
| Time: 78.1 seconds |
| Status: ERROR |
| CheckDir: mmgmos.Rcheck |
| Warnings: NA |
* checking for working latex ... OK * using log directory '/Users/biocbuild/2.0d/Rpacks/mmgmos.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-10-21 r39702) * checking for file 'mmgmos/DESCRIPTION' ... OK * this is package 'mmgmos' version '1.7.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'mmgmos' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable use of $BLAS_LIBS ... OK * creating mmgmos-Ex.R ... OK * checking examples ... ERROR Running examples in 'mmgmos-Ex.R' failed. The error most likely occurred in: > ### * exprReslt-class > > flush(stderr()); flush(stdout()) > > ### Name: exprReslt-class > ### Title: Class exprReslt > ### Aliases: exprReslt-class prcfifty prcfifty<- prcfive prcfive<- > ### prcninfive prcninfive<- prcsevfive prcsevfive<- prctwfive prctwfive<- > ### write.reslts show,exprReslt-method prcfifty,exprReslt-method > ### prcfifty<-,exprReslt-method prcfive,exprReslt-method > ### prcfive<-,exprReslt-method prcninfive,exprReslt-method > ### prcninfive<-,exprReslt-method prcsevfive,exprReslt-method > ### prcsevfive<-,exprReslt-method prctwfive,exprReslt-method > ### prctwfive<-,exprReslt-method write.reslts,exprReslt-method > ### Keywords: classes > > ### ** Examples > > ## load example data from package Affy > data(affybatch.example) > > ## use method mmgmos to calculate the expressiong levels and related confidences > ## of the measures for affybatch.example > eset<-mmgmos(affybatch.example) Model optimising .. Expression values calculating .. Done. Warning: The exprSet class is deprecated, use ExpressionSet instead Error in validObject(.Object) : invalid class "exprReslt" object: 1: invalid object for slot "notes" in class "exprReslt": got class "list", should be or extend class "character" invalid class "exprReslt" object: 2: invalid object for slot "phenoData" in class "exprReslt": got class "AnnotatedDataFrame", should be or extend class "phenoData" Execution halted
mmgmos.Rcheck/00install.out:
* Installing *source* package 'mmgmos' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c donlp2.c -o donlp2.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c multimgmos.c -o multimgmos.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c newx.c -o newx.o
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c user_eval.c -o user_eval.o
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gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o mmgmos.so donlp2.o multimgmos.o newx.o user_eval.o -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c donlp2.c -o donlp2.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c multimgmos.c -o multimgmos.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c newx.c -o newx.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c user_eval.c -o user_eval.o
gcc-4.0 -arch ppc -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o mmgmos.so donlp2.o multimgmos.o newx.o user_eval.o -F/Library/Frameworks/R.framework/.. -framework R
** R
** data
** inst
** help
>>> Building/Updating help pages for package 'mmgmos'
Formats: text html latex example
exprReslt-class text html latex example
hgu95aphis text html latex
justmgMOS text html latex example
justmmgMOS text html latex example
mgmos text html latex example
mmgmos text html latex example
** building package indices ...
* DONE (mmgmos)