Back to the "Multiple platform build/check report"
| Package 112/208 | OS | Arch | BUILD | CHECK | BUILD BIN |
makePlatformDesign0.99.20Benilton Carvalho | Linux (SUSE 9.2) | x86_64 | OK | WARNINGS | |
| Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | ||
| Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
| Solaris 2.9 | sparc | OK | WARNINGS | ||
| Windows Server 2003 | x86_64 | OK | WARNINGS | OK | |
| Windows Server 2003 | NA | OK | ERROR | OK | |
| Mac OS X (10.4.6) | i686 | OK | [ WARNINGS ] |
| Package: makePlatformDesign |
| Version: 0.99.20 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check makePlatformDesign_0.99.20.tar.gz |
| RetCode: 0 |
| Time: 44.3 seconds |
| Status: WARNINGS |
| CheckDir: makePlatformDesign.Rcheck |
| Warnings: 2 |
* checking for working latex ... OK
* using log directory '/Users/biocbuild/2.0d/Rpacks/makePlatformDesign.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-10-21 r39702)
* checking for file 'makePlatformDesign/DESCRIPTION' ... OK
* this is package 'makePlatformDesign' version '0.99.20'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
oligo
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'makePlatformDesign' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'makePDpackage':
makePDpackage
Code: function(designFile, file1 = NULL, file2 = NULL, manufacturer =
c("affymetrix", "nimblegen"), type = c("expression",
"SNP", "tiling", "exon"), extra = NULL, genomebuild =
"hg12")
Docs: function(designFile, file1 = NULL, file2 = NULL, manufacturer =
c("affymetrix", "nimblegen"), type = c("expression",
"SNP", "tiling"), extra = NULL)
Argument names in code not in docs:
genomebuild
Mismatches in argument default values:
Name: type Code: c("expression", "SNP", "tiling", "exon") Docs: c("expression", "SNP", "tiling")
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating makePlatformDesign-Ex.R ... OK
* checking examples ... OK
* creating makePlatformDesign-manual.tex ... OK
* checking makePlatformDesign-manual.tex ... OK
WARNING: There were 2 warnings, see
/Users/biocbuild/2.0d/Rpacks/makePlatformDesign.Rcheck/00check.log
for details
makePlatformDesign.Rcheck/00install.out:
* Installing *source* package 'makePlatformDesign' ...
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c main.c -o main.o
/var/tmp//ccAezitN.s:521:indirect jmp without `*'
/var/tmp//ccAezitN.s:536:indirect jmp without `*'
/var/tmp//ccAezitN.s:551:indirect jmp without `*'
/var/tmp//ccAezitN.s:566:indirect jmp without `*'
/var/tmp//ccAezitN.s:581:indirect jmp without `*'
/var/tmp//ccAezitN.s:596:indirect jmp without `*'
/var/tmp//ccAezitN.s:615:indirect jmp without `*'
/var/tmp//ccAezitN.s:630:indirect jmp without `*'
/var/tmp//ccAezitN.s:649:indirect jmp without `*'
/var/tmp//ccAezitN.s:664:indirect jmp without `*'
/var/tmp//ccAezitN.s:679:indirect jmp without `*'
/var/tmp//ccAezitN.s:694:indirect jmp without `*'
/var/tmp//ccAezitN.s:709:indirect jmp without `*'
/var/tmp//ccAezitN.s:724:indirect jmp without `*'
/var/tmp//ccAezitN.s:739:indirect jmp without `*'
/var/tmp//ccAezitN.s:754:indirect jmp without `*'
/var/tmp//ccAezitN.s:769:indirect jmp without `*'
/var/tmp//ccAezitN.s:784:indirect jmp without `*'
/var/tmp//ccAezitN.s:799:indirect jmp without `*'
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -D__NO_MATH_INLINES -fPIC -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c strutils.c -o strutils.o
/var/tmp//cc2VeuUS.s:1356:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1371:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1386:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1401:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1420:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1435:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1450:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1465:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1480:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1495:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1514:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1529:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1544:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1563:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1578:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1593:indirect jmp without `*'
/var/tmp//cc2VeuUS.s:1608:indirect jmp without `*'
gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o makePlatformDesign.so main.o strutils.o -F/Library/Frameworks/R.framework/.. -framework R
** arch - ppc
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c main.c -o main.o
gcc-4.0 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c strutils.c -o strutils.o
gcc-4.0 -arch ppc -std=gnu99 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o makePlatformDesign.so main.o strutils.o -F/Library/Frameworks/R.framework/.. -framework R
** R
** inst
** preparing package for lazy loading
Loading required package: affyio
** help
>>> Building/Updating help pages for package 'makePlatformDesign'
Formats: text html latex example
makePDpackage text html latex example
makePlatformDesign-internal text html latex
** building package indices ...
* DONE (makePlatformDesign)