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globaltest

4.5.1

Jelle Goeman
Linux (SUSE 9.2) x86_64 OK  WARNINGS 
Linux (SUSE 10.1) x86_64 OK  WARNINGS 
Linux (SUSE 9.2) i686 ERROR skipped
Solaris 2.9 sparc[ ERROR ]skipped
Windows Server 2003 x86_64 ERROR skippedskipped
Windows Server 2003 NA ERROR skippedskipped
Mac OS X (10.4.6) i686 OK  WARNINGS 
Package: globaltest
Version: 4.5.1
Command: /loc/biocbuild/2.0d/R/bin/R CMD build globaltest
RetCode: 1
Time: 324.2 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'globaltest/DESCRIPTION' ... OK
* preparing 'globaltest':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'globaltest' ...
** R
** data
** inst
** save image
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: survival
Loading required package: splines
Creating a new generic function for "fitted.values" in "globaltest"
Creating a new generic function for "residuals" in "globaltest"
** preparing package for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: survival
Loading required package: splines
** help
 >>> Building/Updating help pages for package 'globaltest'
     Formats: text html latex example 
  GOstructure                       text    html    latex
  annotation.vandeVijver            text    html    latex
  checkerboard                      text    html    latex   example
  geneplot                          text    html    latex   example
  globaltest                        text    html    latex   example
  gostructure.vandeVijver           text    html    latex
  gt.barplot-class                  text    html    latex
  gt.result-class                   text    html    latex
  gtGO                              text    html    latex   example
  mlogit                            text    html    latex   example
  multtest                          text    html    latex   example
  permutations                      text    html    latex   example
  regressionplot                    text    html    latex   example
  sampleplot                        text    html    latex   example
  sampling                          text    html    latex   example
  vandeVijver                       text    html    latex
** building package indices ...
* DONE (globaltest)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: multtest
Loading required package: survival
Loading required package: splines
Loading required package: GO
Loading required package: graph
Loading required package: annotate
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Loading required package: geneplotter
Loading required package: lattice
Warning messages:
1: The exprSet class is deprecated, use ExpressionSet instead 
2: The exprSet class is deprecated, use ExpressionSet instead 
3: The exprSet class is deprecated, use ExpressionSet instead 
4: The exprSet class is deprecated, use ExpressionSet instead 
5: The exprSet class is deprecated, use ExpressionSet instead 
6: The exprSet class is deprecated, use ExpressionSet instead 
7: The exprSet class is deprecated, use ExpressionSet instead 
8: The exprSet class is deprecated, use ExpressionSet instead 
9: The exprSet class is deprecated, use ExpressionSet instead 
10: The exprSet class is deprecated, use ExpressionSet instead 

Error:  chunk 33 (label=visualizeGO) 
Error: package/namespace load failed for 'Rgraphviz'
Error in buildVignettes(dir = ".") : Error:  chunk 33 (label=visualizeGO) 
Error: package/namespace load failed for 'Rgraphviz'
Execution halted