Package: EBImage

Version: 1.5.007

Command: /loc/biocbuild/2.0d/R/bin/R CMD build EBImage

RetCode: 0

Time: 63.9 seconds

Status: OK

PackageFile: EBImage_1.5.007.tar.gz

* checking for file 'EBImage/DESCRIPTION' ... OK
* preparing 'EBImage':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'EBImage' ...
checking for Magick++-config... yes
ImageMagick version 6.2.8 found
checking for Magick++-config... yes
ImageMagick++ includes located in -I/usr/local/include
checking for pkg-config... yes
sh: gnome-config: not found
Package gtk+-2.0 was not found in the pkg-config search path.
Perhaps you should add the directory containing `gtk+-2.0.pc'
to the PKG_CONFIG_PATH environment variable
No package 'gtk+-2.0' found
Compiling without GTK+ support
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -I/usr/local/include -D_REENTRANT -pthreads  -fPIC  -g -O2 -Wall -c alg_watershed.cpp -o alg_watershed.o
alg_watershed.cpp: In function 'SEXPREC* ws_objects(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
alg_watershed.cpp:159: warning: comparison between signed and unsigned integer expressions
alg_watershed.cpp:182: warning: comparison between signed and unsigned integer expressions
alg_watershed.cpp: In function 'void doWatershed(double*, Point&, double, double, std::vector >&, double)':
alg_watershed.cpp:698: warning: unused variable 'nnghb'
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -I/usr/local/include -D_REENTRANT -pthreads  -fPIC  -g -O2 -Wall -c colors.cpp -o colors.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -I/usr/local/include -D_REENTRANT -pthreads  -fPIC  -g -O2 -Wall -c common.cpp -o common.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -I/usr/local/include -D_REENTRANT -pthreads  -fPIC  -g -O2 -Wall -c conversions.cpp -o conversions.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -I/usr/local/include -D_REENTRANT -pthreads  -fPIC  -g -O2 -Wall -c display.cpp -o display.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -I/usr/local/include -D_REENTRANT -pthreads  -fPIC  -g -O2 -Wall -c drawables.cpp -o drawables.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -I/usr/local/include -D_REENTRANT -pthreads  -fPIC  -g -O2 -Wall -c flt_distmap.cpp -o flt_distmap.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -I/usr/local/include -D_REENTRANT -pthreads  -fPIC  -g -O2 -Wall -c flt_magick.cpp -o flt_magick.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -I/usr/local/include -D_REENTRANT -pthreads  -fPIC  -g -O2 -Wall -c flt_morph.cpp -o flt_morph.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -I/usr/local/include -D_REENTRANT -pthreads  -fPIC  -g -O2 -Wall -c flt_normalize.cpp -o flt_normalize.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -I/usr/local/include -D_REENTRANT -pthreads  -fPIC  -g -O2 -Wall -c flt_thresh.cpp -o flt_thresh.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -I/usr/local/include -D_REENTRANT -pthreads  -fPIC  -g -O2 -Wall -c indexing.cpp -o indexing.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -I/usr/local/include -D_REENTRANT -pthreads  -fPIC  -g -O2 -Wall -c io.cpp -o io.o
g++ -I/loc/biocbuild/2.0d/R/include -I/loc/biocbuild/2.0d/R/include  -I/usr/local/include   -I/usr/local/include -D_REENTRANT -pthreads  -fPIC  -g -O2 -Wall -c libmain.cpp -o libmain.o
g++ -G -L/usr/local/lib -o EBImage.so alg_watershed.o colors.o common.o conversions.o display.o drawables.o flt_distmap.o flt_magick.o flt_morph.o flt_normalize.o flt_thresh.o indexing.o io.o libmain.o -L/usr/local/lib -L/usr/openwin/lib -R/usr/openwin/lib -L/usr/local/lib -R/usr/local/lib -lfreetype -lz -L/usr/local/lib -lMagick++ -lMagick -lfreetype -ljpeg -lXext -lSM -lICE -lX11 -lsocket -lnsl -lXt -lbz2 -lz -lpthread -lm -lpthread -lWand -lMagick   
** R
** inst
** save image
** help
 >>> Building/Updating help pages for package 'EBImage'
     Formats: text html latex example 
  Drawable.class                    text    html    latex   example
  Drawable.draw                     text    html    latex   example
  EBImage-package                   text    html    latex
  Image.class                       text    html    latex   example
  Image.io                          text    html    latex   example
  alg.watershed                     text    html    latex   example
  colors                            text    html    latex   example
  colors.arithm                     text    html    latex
  flt.distMap                       text    html    latex   example
  flt.magick-colors                 text    html    latex   example
  flt.magick-enhance                text    html    latex   example
  flt.magick-segment                text    html    latex   example
  flt.magick-transform              text    html    latex   example
  flt.magick                        text    html    latex
  flt.morph                         text    html    latex   example
  flt.morph.mKernel                 text    html    latex   example
  flt.thresh                        text    html    latex   example
  internals                         text    html    latex
  tools                             text    html    latex
  updates                           text    html    latex
** building package indices ...
* DONE (EBImage)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'EBImage_1.5.007.tar.gz'