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marray

1.12.0

Yee Hwa (Jean) Yang
Last Changed Date: 2006-10-03 12:16:03 -0700
Last Changed Rev: 20373
lamb1 Linux (SUSE 10.1) x86_64 [ OK ] WARNINGS 
wellington Linux (SUSE 9.2) i686  OK  WARNINGS 
churchill Solaris 2.9 sparc  OK  WARNINGS 
lemming Windows Server 2003 x86_64  OK  WARNINGS  OK 
Package: marray
Version: 1.12.0
Command: /home/biocbuild/bbs-1.9/R/bin/R CMD build marray
RetCode: 0
Time: 58.3 seconds
Status: OK
PackageFile: marray_1.12.0.tar.gz

Command output

* checking for file 'marray/DESCRIPTION' ... OK
* preparing 'marray':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'marray' ...
** R
** data
** inst
** save image
Loading required package: limma
[1] "marrayInfo"
[1] "marrayLayout"
[1] "marrayRaw"
[1] "marrayNorm"
[1] "maLabels"
[1] "maLabels"
[1] "maInfo"
[1] "maInfo"
[1] "maNotes"
[1] "maNotes"
[1] "maNspots"
[1] "maNspots"
[1] "maNgr"
[1] "maNgr"
[1] "maNgc"
[1] "maNgc"
[1] "maNsr"
[1] "maNsr"
[1] "maNsc"
[1] "maNsc"
[1] "maSub"
[1] "maSub"
[1] "maPlate"
[1] "maPlate"
[1] "maControls"
[1] "maControls"
[1] "maNotes"
[1] "maGridRow"
[1] "maGridRow"
[1] "maGridCol"
[1] "maGridCol"
[1] "maSpotRow"
[1] "maSpotRow"
[1] "maSpotCol"
[1] "maSpotCol"
[1] "maPrintTip"
[1] "maPrintTip"
[1] "maRf"
[1] "maRf"
[1] "maGf"
[1] "maGf"
[1] "maRb"
[1] "maRb"
[1] "maGb"
[1] "maGb"
[1] "maW"
[1] "maW"
[1] "maLR"
[1] "maLR"
[1] "maLG"
[1] "maLG"
[1] "maM"
[1] "maM"
[1] "maA"
[1] "maA"
[1] "maLayout"
[1] "maLayout"
[1] "maNspots"
[1] "maNgr"
[1] "maNgc"
[1] "maNsr"
[1] "maNsc"
[1] "maGridRow"
[1] "maGridCol"
[1] "maSpotRow"
[1] "maSpotCol"
[1] "maPrintTip"
[1] "maSub"
[1] "maPlate"
[1] "maControls"
[1] "maNsamples"
[1] "maNsamples"
[1] "maGnames"
[1] "maGnames"
[1] "maTargets"
[1] "maTargets"
[1] "maNotes"
[1] "maA"
[1] "maM"
[1] "maMloc"
[1] "maMloc"
[1] "maMscale"
[1] "maMscale"
[1] "maW"
[1] "maLR"
[1] "maLG"
[1] "maLayout"
[1] "maNspots"
[1] "maNgr"
[1] "maNgc"
[1] "maNsr"
[1] "maNsc"
[1] "maGridRow"
[1] "maGridCol"
[1] "maSpotRow"
[1] "maSpotCol"
[1] "maPrintTip"
[1] "maSub"
[1] "maPlate"
[1] "maControls"
[1] "maNsamples"
[1] "maGnames"
[1] "maTargets"
[1] "maNotes"
[1] "maNormCall"
[1] "maNormCall"
[1] "maLabels<-"
[1] "maLabels<-"
[1] "maLabels<-"
[1] "maInfo<-"
[1] "maInfo<-"
[1] "maNgr<-"
[1] "maNgr<-"
[1] "maNgr<-"
[1] "maNgr<-"
[1] "maNgc<-"
[1] "maNgc<-"
[1] "maNgc<-"
[1] "maNgc<-"
[1] "maNsr<-"
[1] "maNsr<-"
[1] "maNsr<-"
[1] "maNsr<-"
[1] "maNsc<-"
[1] "maNsc<-"
[1] "maNsc<-"
[1] "maNsc<-"
[1] "maNspots<-"
[1] "maNspots<-"
[1] "maNspots<-"
[1] "maNspots<-"
[1] "maSub<-"
[1] "maSub<-"
[1] "maSub<-"
[1] "maSub<-"
[1] "maSub<-"
[1] "maPlate<-"
[1] "maPlate<-"
[1] "maPlate<-"
[1] "maPlate<-"
[1] "maControls<-"
[1] "maControls<-"
[1] "maControls<-"
[1] "maControls<-"
[1] "maLayout<-"
[1] "maLayout<-"
[1] "maLayout<-"
[1] "maGnames<-"
[1] "maGnames<-"
[1] "maGnames<-"
[1] "maTargets<-"
[1] "maTargets<-"
[1] "maTargets<-"
[1] "maW<-"
[1] "maW<-"
[1] "maW<-"
[1] "maGf<-"
[1] "maGf<-"
[1] "maRf<-"
[1] "maRf<-"
[1] "maGb<-"
[1] "maGb<-"
[1] "maGb<-"
[1] "maRb<-"
[1] "maRb<-"
[1] "maRb<-"
[1] "maA<-"
[1] "maA<-"
[1] "maM<-"
[1] "maM<-"
[1] "maMloc<-"
[1] "maMloc<-"
[1] "maMscale<-"
[1] "maMscale<-"
[1] "maNotes<-"
[1] "maNotes<-"
[1] "maNotes<-"
[1] "maNotes<-"
[1] "maNotes<-"
[1] "summary"
[1] "summary"
[1] "summary"
[1] "summary"
[1] "summary"
[1] "ShowLargeObject"
[1] "show"
[1] "["
[1] "["
[1] "["
[1] "["
[1] "boxplot"
[1] "boxplot"
[1] "boxplot"
[1] "image"
[1] "image"
[1] "image"
[1] "points"
[1] "points"
[1] "points"
[1] "text"
[1] "text"
[1] "text"
[1] "lines"
[1] "lines"
[1] "lines"
** help
 >>> Building/Updating help pages for package 'marray'
     Formats: text html latex example 
  boxplot                           text    html    latex   example
  bracketMethods                    text    html    latex
  cbind                             text    html    latex   example
  checkTargetInfo                   text    html    latex   example
  coerce-methods                    text    html    latex
  dim                               text    html    latex   example
  findID                            text    html    latex   example
  htmlPage                          text    html    latex   example
  image                             text    html    latex   example
  ma2D                              text    html    latex   example
  maBoxplot                         text    html    latex   example
  maColorBar                        text    html    latex   example
  maCompCoord                       text    html    latex   example
  maCompInd                         text    html    latex   example
  maCompLayout                      text    html    latex   example
  maCompNormA                       text    html    latex   example
  maCompPlate                       text    html    latex   example
  maCoord2Ind                       text    html    latex   example
  maDefaultPar                      text    html    latex   example
  maDotsDefaults                    text    html    latex   example
  maDotsMatch                       text    html    latex   example
  maGenControls                     text    html    latex   example
  maGeneTable                       text    html    latex   example
  maImage                           text    html    latex   example
  maImage.func                      text    html    latex   example
  maInd2Coord                       text    html    latex   example
  maLegendLines                     text    html    latex   example
  maLoess                           text    html    latex   example
  maLoessLines                      text    html    latex   example
  maMAD                             text    html    latex   example
  maMed                             text    html    latex   example
  maNA                              text    html    latex
  maNorm                            text    html    latex   example
  maNorm2D                          text    html    latex   example
  maNormLoess                       text    html    latex   example
  maNormMAD                         text    html    latex   example
  maNormMain                        text    html    latex   example
  maNormMed                         text    html    latex   example
  maNormScale                       text    html    latex   example
  maNum2Logic                       text    html    latex   example
  maPalette                         text    html    latex   example
  maPlot                            text    html    latex   example
  maPlot.func                       text    html    latex   example
  maSelectGnames                    text    html    latex   example
  maText                            text    html    latex   example
  maTop                             text    html    latex   example
  maTwoSamples                      text    html    latex
  mapGeneInfo                       text    html    latex   example
  marray-internal                   text    html    latex
  marrayInfo-class                  text    html    latex   example
  marrayLayout-class                text    html    latex   example
  marrayNorm-class                  text    html    latex   example
  marrayRaw-class                   text    html    latex   example
  opVersionID                       text    html    latex   example
  plotMA                            text    html    latex   example
  print-methods                     text    html    latex
  read.Galfile                      text    html    latex   example
  read.marrayInfo                   text    html    latex   example
  read.marrayLayout                 text    html    latex   example
  read.marrayRaw                    text    html    latex   example
  rm.na                             text    html    latex   example
  showLargeObject                   text    html    latex   example
  stat.confband.text                text    html    latex   example
  stat.gnames                       text    html    latex   example
  swirl                             text    html    latex
  write.list                        text    html    latex   example
  write.marray                      text    html    latex   example
  write.xls                         text    html    latex   example
** building package indices ...
* DONE (marray)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'marray_1.12.0.tar.gz'