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annotate

1.12.1

Biocore Team
Last Changed Date: 2006-11-28 13:39:39 -0800
Last Changed Rev: 21306
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK  OK 
churchill Solaris 2.9 sparc  OK  OK 
lemming Windows Server 2003 x86_64 [ OK ] OK  OK 
Package: annotate
Version: 1.12.1
Command: D:\biocbld\bbs-1.9\R\bin\R.exe CMD build annotate
RetCode: 0
Time: 168.3 seconds
Status: OK
PackageFile: annotate_1.12.1.tar.gz

Command output

* checking for file 'annotate/DESCRIPTION' ... OK
* preparing 'annotate':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-1.9/tmpdir/Rinst526059597


---------- Making package annotate ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'annotate'
     Formats: text html latex example chm 
  ACCNUMStats                       text    html    latex   example chm
  GO2heatmap                        text    html    latex   example chm
  GOTerms-class                     text    html    latex   example chm
  GOmnplot                          text    html    latex   example chm
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  LL2homology                       text    html    latex   example chm
  PMIDAmat                          text    html    latex   example chm
  PWAmat                            text    html    latex   example chm
  UniGeneQuery                      text    html    latex   example chm
  accessionToUID                    text    html    latex   example chm
  buildChromLocation                text    html    latex   example chm
  buildPubMedAbst                   text    html    latex   example chm
  chrCats                           text    html    latex   example chm
  chromLocation-class               text    html    latex   example chm
  compatibleVersions                text    html    latex   example chm
  dropECode                         text    html    latex   example chm
  findNeighbors                     text    html    latex   example chm
  genbank                           text    html    latex   example chm
  genelocator                       text    html    latex   example chm
  getEvidence                       text    html    latex   example chm
  getGOTerm                         text    html    latex   example chm
  getOntology                       text    html    latex   example chm
  getPMInfo                         text    html    latex   example chm
  getSYMBOL                         text    html    latex   example chm
  getSeq4Acc                        text    html    latex   example chm
  getTDRows                         text    html    latex           chm
  hasGOannote                       text    html    latex   example chm
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  htmlpage                          text    html    latex   example chm
  installDataPackage                text    html    latex   example chm
  locuslinkById                     text    html    latex   example chm
  locuslinkQuery                    text    html    latex   example chm
  makeAnchor                        text    html    latex   example chm
  neighborGeneFinder                text    html    latex   example chm
  p2LL                              text    html    latex   example chm
  pm.abstGrep                       text    html    latex   example chm
  pm.getabst                        text    html    latex   example chm
  pm.titles                         text    html    latex   example chm
  pmAbst2HTML                       text    html    latex   example chm
  pmid2MIAME                        text    html    latex   example chm
  pmidQuery                         text    html    latex   example chm
  probesByLL                        text    html    latex   example chm
  pubMedAbst-class                  text    html    latex   example chm
  pubmed                            text    html    latex   example chm
  readGEOAnn                        text    html    latex   example chm
  serializeEnv                      text    html    latex   example chm
  usedChromGenes                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-1.9\meat\annotate\chm\annotate.chm





Compile time: 0 minutes, 0 seconds

55	Topics

301	Local links

7	Internet links

1	Graphic





Created d:\biocbld\bbs-1.9\meat\annotate\chm\annotate.chm, 88,385 bytes

Compression decreased file by 130,781 bytes.

  adding MD5 sums

* DONE (annotate)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'annotate_1.12.1.tar.gz'