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EBarrays

1.6.0

Deepayan Sarkar
Last Changed Date: 2006-10-03 12:16:03 -0700
Last Changed Rev: 20373
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686  OK [ OK ]
churchill Solaris 2.9 sparc  OK  OK 
lemming Windows Server 2003 x86_64  OK  OK  OK 
Package: EBarrays
Version: 1.6.0
Command: /loc/biocbuild/bbs-1.9/R/bin/R CMD check EBarrays_1.6.0.tar.gz
RetCode: 0
Time: 216.0 seconds
Status: OK
CheckDir: EBarrays.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-1.9/meat/EBarrays.Rcheck'
* using R version 2.4.1 (2006-12-18)
* checking for file 'EBarrays/DESCRIPTION' ... OK
* this is package 'EBarrays' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'EBarrays' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating EBarrays-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/extra/loc/biocbuild/bbs-1.9/meat/EBarrays.Rcheck/tests'
  Running 'test.R'
make[1]: Leaving directory `/extra/loc/biocbuild/bbs-1.9/meat/EBarrays.Rcheck/tests'
 OK
* checking package vignettes in 'inst/doc' ... OK
* creating EBarrays-manual.tex ... OK
* checking EBarrays-manual.tex ... OK

EBarrays.Rcheck/00install.out:

* Installing *source* package 'EBarrays' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-1.9/R/include -I/loc/biocbuild/bbs-1.9/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c ebarrays.c -o ebarrays.o
gcc -std=gnu99 -shared -L/usr/local/lib -o EBarrays.so ebarrays.o   
** R
** data
** demo
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: lattice
[1] "ebarraysFamily"
[1] "ebarraysPatterns"
[1] "show"
[1] "show"
[1] "ebarraysEmFit"
[1] "show"
[1] "emfit"
[1] "emfit"
[1] "emfit"
[1] "emfit"
[1] "emfit"
[1] "emfit"
[1] "emfit"
[1] "postprob"
[1] "ebarraysPostProb"
[1] "show"
[1] "postprob"
[1] "postprob"
[1] "postprob"
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: lattice
** help
 >>> Building/Updating help pages for package 'EBarrays'
     Formats: text html latex example 
  ebarraysFamily-class              text    html    latex   example
  ebplots                           text    html    latex   example
  emfit                             text    html    latex   example
  gould                             text    html    latex   example
  postprob                          text    html    latex
  utilities                         text    html    latex   example
** building package indices ...
* DONE (EBarrays)