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Package 17/188OSArchBUILDCHECKBUILD BIN

annotate

1.12.1

Biocore Team
Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Windows Server 2003 x86_64 OK [ OK ] OK 
Package: annotate
Version: 1.12.1
Command: D:\biocbld\1.9d\R\bin\R.exe CMD check annotate_1.12.1.tar.gz
RetCode: 0
Time: 393.4 seconds
Status: OK
CheckDir: annotate.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.9d/Rpacks/annotate.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'annotate/DESCRIPTION' ... OK
* this is package 'annotate' version '1.12.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annotate' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating annotate-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating annotate-manual.tex ... OK
* checking annotate-manual.tex ... OK

annotate.Rcheck/00install.out:

installing R.css in D:/biocbld/1.9d/Rpacks/annotate.Rcheck


---------- Making package annotate ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'annotate'
     Formats: text html latex example chm 
  ACCNUMStats                       text    html    latex   example chm
  GO2heatmap                        text    html    latex   example chm
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  getGOTerm                         text    html    latex   example chm
  getOntology                       text    html    latex   example chm
  getPMInfo                         text    html    latex   example chm
  getSYMBOL                         text    html    latex   example chm
  getSeq4Acc                        text    html    latex   example chm
  getTDRows                         text    html    latex           chm
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  makeAnchor                        text    html    latex   example chm
  neighborGeneFinder                text    html    latex   example chm
  p2LL                              text    html    latex   example chm
  pm.abstGrep                       text    html    latex   example chm
  pm.getabst                        text    html    latex   example chm
  pm.titles                         text    html    latex   example chm
  pmAbst2HTML                       text    html    latex   example chm
  pmid2MIAME                        text    html    latex   example chm
  pmidQuery                         text    html    latex   example chm
  probesByLL                        text    html    latex   example chm
  pubMedAbst-class                  text    html    latex   example chm
  pubmed                            text    html    latex   example chm
  readGEOAnn                        text    html    latex   example chm
  serializeEnv                      text    html    latex   example chm
  usedChromGenes                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.9d\Rpacks\annotate.Rcheck\00_pkg_src\annotate\chm\annotate.chm


Compile time: 0 minutes, 0 seconds
55	Topics
301	Local links
7	Internet links
1	Graphic


Created d:\biocbld\1.9d\Rpacks\annotate.Rcheck\00_pkg_src\annotate\chm\annotate.chm, 88,387 bytes
Compression decreased file by 130,779 bytes.
  adding MD5 sums

* DONE (annotate)