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| Package: ontoTools |
| Version: 1.8.0 |
| Command: D:\biocbld\R-2.3.0\bin\R.exe CMD INSTALL --build ontoTools_1.8.0.tar.gz |
| RetCode: 0 |
| Time: 26.0 seconds |
| Status: OK |
| PackageFile: ontoTools_1.8.0.zip |
Using auto-selected zip options 'ontoTools-ZIPDATA=zip'
---------- Making package ontoTools ------------
adding build stamp to DESCRIPTION
installing R files
save image
Loading required package: graph
Loading required package: Ruuid
Loading required package: SparseM
[1] "SparseM library loaded"
Loading required package: GO
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: annotate
[1] TRUE
[1] "rootedDAG"
[1] "root"
[1] "root"
[1] "DAG"
[1] "DAG"
[1] "getMatrix"
[1] "getMatrix"
[1] "compoundGraph"
[1] "grList"
[1] "grList"
[1] "between"
[1] "between"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "toDot"
[1] "adjMat"
[1] "adjMat"
[1] TRUE
[1] "namedSparse"
[1] "dimnames"
[1] "rowinds"
[1] "colinds"
[1] "mat"
[1] "mat"
[1] "["
[1] "rowinds"
[1] "colinds"
[1] "dimnames<-"
[1] "mat"
[1] "mat"
[1] "nrow"
[1] "nrow"
[1] "ncol"
[1] "ncol"
[1] "dimnames"
[1] "as.matrix"
[1] "colSums"
[1] "rowSums"
[1] "colSums"
[1] "rowSums"
[1] "Arith"
[1] "%*%"
[1] "+"
[1] "maxval"
[1] "maxval"
[1] "show"
[1] "t"
[1] "ontology"
[1] "name"
[1] "name"
[1] "OVersion"
[1] "OVersion"
[1] "rDAG"
[1] "rDAG"
[1] "show"
[1] "accessMat"
[1] "accessMat"
[1] "OOC"
[1] "ontology"
[1] "ontology"
[1] "OOmap"
[1] "OOmap"
[1] "show"
[1] "coverageMat"
[1] "coverageMat"
[1] "provStruct"
[1] "show"
[1] "nomenclature"
[1] "taggedHierNomenclature"
[1] "show"
[1] "GDIontology"
[1] "show"
[1] "parents"
[1] "parents"
[1] "children"
[1] "children"
[1] "grep"
[1] "grep"
[1] "getTerms"
[1] "getTerms"
[1] "annotationResource"
[1] "symMapping"
[1] "typedSymMapping"
[1] "show"
[1] "GDIplatform"
[1] "show"
[1] "getDefs"
[1] "getDefs"
[1] "GDILabel"
[1] TRUE
[1] "exptArchive"
[1] "show"
[1] "exptSample"
[1] "show"
[1] "annoSource"
installing inst files
installing data files
installing man source files
installing indices
zipping data
installing help
>>> Building/Updating help pages for package 'ontoTools'
Formats: text html latex example chm
A.csr text html latex chm
GDI text html latex example chm
LLGOMFcp text html latex chm
OOC-class text html latex example chm
SGDIvocab text html latex example chm
STMA text html latex example chm
accessMat text html latex example chm
buildGOgraph text html latex example chm
compoundGraph-class text html latex example chm
depthStruct text html latex example chm
gomfAmat text html latex chm
litOnto text html latex chm
namedSparse-class text html latex example chm
ontology-class text html latex example chm
ooMapLL2GOMFdemo text html latex chm
otkvEnv2namedSparse text html latex example chm
rootedDAG-class text html latex example chm
semsim text html latex example chm
taggedHierNomenclature-class text html latex example chm
toDot-methods text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\work-area\1.8d\madman\Rpacks\R.INSTALL\ontoTools\chm\ontoTools.chm
Compile time: 0 minutes, 0 seconds
21 Topics
179 Local links
0 Internet links
1 Graphic
Created d:\biocbld\work-area\1.8d\madman\Rpacks\R.INSTALL\ontoTools\chm\ontoTools.chm, 43,515 bytes
Compression decreased file by 61,028 bytes.
adding MD5 sums
packaged installation of package 'ontoTools' as ontoTools_1.8.0.zip
* DONE (ontoTools)