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Package: marray
Version: 1.10.0
Command: D:\biocbld\R-2.3.0\bin\R.exe CMD build marray
RetCode: 0
Time: 670.2 seconds
Status: OK
PackageFile: marray_1.10.0.tar.gz

Command output

* checking for file 'marray/DESCRIPTION' ... OK
* preparing 'marray':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/work-area/1.8d/tmpdir/Rinst41676113


---------- Making package marray ------------
  adding build stamp to DESCRIPTION
  installing R files
  save image
Loading required package: limma
[1] "marrayInfo"
[1] "marrayLayout"
[1] "marrayRaw"
[1] "marrayNorm"
[1] "maLabels"
[1] "maLabels"
[1] "maInfo"
[1] "maInfo"
[1] "maNotes"
[1] "maNotes"
[1] "maNspots"
[1] "maNspots"
[1] "maNgr"
[1] "maNgr"
[1] "maNgc"
[1] "maNgc"
[1] "maNsr"
[1] "maNsr"
[1] "maNsc"
[1] "maNsc"
[1] "maSub"
[1] "maSub"
[1] "maPlate"
[1] "maPlate"
[1] "maControls"
[1] "maControls"
[1] "maNotes"
[1] "maGridRow"
[1] "maGridRow"
[1] "maGridCol"
[1] "maGridCol"
[1] "maSpotRow"
[1] "maSpotRow"
[1] "maSpotCol"
[1] "maSpotCol"
[1] "maPrintTip"
[1] "maPrintTip"
[1] "maRf"
[1] "maRf"
[1] "maGf"
[1] "maGf"
[1] "maRb"
[1] "maRb"
[1] "maGb"
[1] "maGb"
[1] "maW"
[1] "maW"
[1] "maLR"
[1] "maLR"
[1] "maLG"
[1] "maLG"
[1] "maM"
[1] "maM"
[1] "maA"
[1] "maA"
[1] "maLayout"
[1] "maLayout"
[1] "maNspots"
[1] "maNgr"
[1] "maNgc"
[1] "maNsr"
[1] "maNsc"
[1] "maGridRow"
[1] "maGridCol"
[1] "maSpotRow"
[1] "maSpotCol"
[1] "maPrintTip"
[1] "maSub"
[1] "maPlate"
[1] "maControls"
[1] "maNsamples"
[1] "maNsamples"
[1] "maGnames"
[1] "maGnames"
[1] "maTargets"
[1] "maTargets"
[1] "maNotes"
[1] "maA"
[1] "maM"
[1] "maMloc"
[1] "maMloc"
[1] "maMscale"
[1] "maMscale"
[1] "maW"
[1] "maLR"
[1] "maLG"
[1] "maLayout"
[1] "maNspots"
[1] "maNgr"
[1] "maNgc"
[1] "maNsr"
[1] "maNsc"
[1] "maGridRow"
[1] "maGridCol"
[1] "maSpotRow"
[1] "maSpotCol"
[1] "maPrintTip"
[1] "maSub"
[1] "maPlate"
[1] "maControls"
[1] "maNsamples"
[1] "maGnames"
[1] "maTargets"
[1] "maNotes"
[1] "maNormCall"
[1] "maNormCall"
[1] "maLabels<-"
[1] "maLabels<-"
[1] "maLabels<-"
[1] "maInfo<-"
[1] "maInfo<-"
[1] "maNgr<-"
[1] "maNgr<-"
[1] "maNgr<-"
[1] "maNgr<-"
[1] "maNgc<-"
[1] "maNgc<-"
[1] "maNgc<-"
[1] "maNgc<-"
[1] "maNsr<-"
[1] "maNsr<-"
[1] "maNsr<-"
[1] "maNsr<-"
[1] "maNsc<-"
[1] "maNsc<-"
[1] "maNsc<-"
[1] "maNsc<-"
[1] "maNspots<-"
[1] "maNspots<-"
[1] "maNspots<-"
[1] "maNspots<-"
[1] "maSub<-"
[1] "maSub<-"
[1] "maSub<-"
[1] "maSub<-"
[1] "maSub<-"
[1] "maPlate<-"
[1] "maPlate<-"
[1] "maPlate<-"
[1] "maPlate<-"
[1] "maControls<-"
[1] "maControls<-"
[1] "maControls<-"
[1] "maControls<-"
[1] "maLayout<-"
[1] "maLayout<-"
[1] "maLayout<-"
[1] "maGnames<-"
[1] "maGnames<-"
[1] "maGnames<-"
[1] "maTargets<-"
[1] "maTargets<-"
[1] "maTargets<-"
[1] "maW<-"
[1] "maW<-"
[1] "maW<-"
[1] "maGf<-"
[1] "maGf<-"
[1] "maRf<-"
[1] "maRf<-"
[1] "maGb<-"
[1] "maGb<-"
[1] "maGb<-"
[1] "maRb<-"
[1] "maRb<-"
[1] "maRb<-"
[1] "maA<-"
[1] "maA<-"
[1] "maM<-"
[1] "maM<-"
[1] "maMloc<-"
[1] "maMloc<-"
[1] "maMscale<-"
[1] "maMscale<-"
[1] "maNotes<-"
[1] "maNotes<-"
[1] "maNotes<-"
[1] "maNotes<-"
[1] "maNotes<-"
[1] "summary"
[1] "summary"
[1] "summary"
[1] "summary"
[1] "summary"
[1] "ShowLargeObject"
[1] "show"
[1] "["
[1] "["
[1] "["
[1] "["
[1] "boxplot"
[1] "boxplot"
[1] "boxplot"
[1] "image"
[1] "image"
[1] "image"
[1] "points"
[1] "points"
[1] "points"
[1] "text"
[1] "text"
[1] "text"
[1] "lines"
[1] "lines"
[1] "lines"
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'marray'
     Formats: text html latex example chm 
  boxplot                           text    html    latex   example chm
  bracketMethods                    text    html    latex           chm
  cbind                             text    html    latex   example chm
  checkTargetInfo                   text    html    latex   example chm
  coerce-methods                    text    html    latex           chm
  dim                               text    html    latex   example chm
  findID                            text    html    latex   example chm
  htmlPage                          text    html    latex   example chm
  image                             text    html    latex   example chm
  ma2D                              text    html    latex   example chm
  maBoxplot                         text    html    latex   example chm
  maColorBar                        text    html    latex   example chm
  maCompCoord                       text    html    latex   example chm
  maCompInd                         text    html    latex   example chm
  maCompLayout                      text    html    latex   example chm
  maCompNormA                       text    html    latex   example chm
  maCompPlate                       text    html    latex   example chm
  maCoord2Ind                       text    html    latex   example chm
  maDefaultPar                      text    html    latex   example chm
  maDotsDefaults                    text    html    latex   example chm
  maDotsMatch                       text    html    latex   example chm
  maGenControls                     text    html    latex   example chm
  maGeneTable                       text    html    latex   example chm
  maImage                           text    html    latex   example chm
  maImage.func                      text    html    latex   example chm
  maInd2Coord                       text    html    latex   example chm
  maLegendLines                     text    html    latex   example chm
  maLoess                           text    html    latex   example chm
  maLoessLines                      text    html    latex   example chm
  maMAD                             text    html    latex   example chm
  maMed                             text    html    latex   example chm
  maNA                              text    html    latex           chm
  maNorm                            text    html    latex   example chm
  maNorm2D                          text    html    latex   example chm
  maNormLoess                       text    html    latex   example chm
  maNormMAD                         text    html    latex   example chm
  maNormMain                        text    html    latex   example chm
  maNormMed                         text    html    latex   example chm
  maNormScale                       text    html    latex   example chm
  maNum2Logic                       text    html    latex   example chm
  maPalette                         text    html    latex   example chm
  maPlot                            text    html    latex   example chm
  maPlot.func                       text    html    latex   example chm
  maSelectGnames                    text    html    latex   example chm
  maText                            text    html    latex   example chm
  maTop                             text    html    latex   example chm
  maTwoSamples                      text    html    latex           chm
  mapGeneInfo                       text    html    latex   example chm
  marray-internal                   text    html    latex           chm
  marrayInfo-class                  text    html    latex   example chm
  marrayLayout-class                text    html    latex   example chm
  marrayNorm-class                  text    html    latex   example chm
  marrayRaw-class                   text    html    latex   example chm
  opVersionID                       text    html    latex   example chm
  plotMA                            text    html    latex   example chm
  print-methods                     text    html    latex           chm
  read.Galfile                      text    html    latex   example chm
  read.marrayInfo                   text    html    latex   example chm
  read.marrayLayout                 text    html    latex   example chm
  read.marrayRaw                    text    html    latex   example chm
  rm.na                             text    html    latex   example chm
  showLargeObject                   text    html    latex   example chm
  stat.confband.text                text    html    latex   example chm
  stat.gnames                       text    html    latex   example chm
  swirl                             text    html    latex           chm
  write.list                        text    html    latex   example chm
  write.marray                      text    html    latex   example chm
  write.xls                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\work-area\1.8d\madman\Rpacks\marray\chm\marray.chm





Compile time: 0 minutes, 0 seconds

69	Topics

700	Local links

37	Internet links

1	Graphic





Created d:\biocbld\work-area\1.8d\madman\Rpacks\marray\chm\marray.chm, 109,573 bytes

Compression decreased file by 270,318 bytes.

  adding MD5 sums

* DONE (marray)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'marray_1.10.0.tar.gz'