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Command output

* checking for file 'GeneR/DESCRIPTION' ... OK
* preparing 'GeneR':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/work-area/1.8d/tmpdir/Rinst684899743


---------- Making package GeneR ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making GeneR_glob.d from GeneR_glob.cc
making GeneR_seq.d from GeneR_seq.cc
making complementaire.d from complementaire.cc
making compoSeq.d from compoSeq.cc
making dnaRna.d from dnaRna.cc
making libIndex.d from libIndex.cc
making libStrings.d from libStrings.cc
making makeIndex.d from makeIndex.cc
making masked.d from masked.cc
making misc.d from misc.cc
making readEmblDescript.d from readEmblDescript.cc
making readIndex.d from readIndex.cc
making readLocation.d from readLocation.cc
making readSeqEmbl.d from readSeqEmbl.cc
making readSeqFasta.d from readSeqFasta.cc
making readSeqGbk.d from readSeqGbk.cc
making seqManip.d from seqManip.cc
making translate.d from translate.cc
making upperSeq.d from upperSeq.cc
making vecteurs.d from vecteurs.cc
making writeFasta.d from writeFasta.cc
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2   -c GeneR_glob.cc -o GeneR_glob.o
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2   -c GeneR_seq.cc -o GeneR_seq.o
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2   -c complementaire.cc -o complementaire.o
g++   -Id:/biocbld/R-2.3.0/include -Wall -O2   -c compoSeq.cc -o compoSeq.o
compoSeq.cc: In function `void sys_exactmatch(int*, char**, int*, int*, int*, int*, int*, int*, int*, int*, int*, int*)':
compoSeq.cc:77: error: `strcasestr' undeclared (first use this function)
compoSeq.cc:77: error: (Each undeclared identifier is reported only once for each function it appears in.)
make[3]: *** [compoSeq.o] Error 1
make[2]: *** [srcDynlib] Error 2
make[1]: *** [all] Error 2
make: *** [pkg-GeneR] Error 2
*** Installation of GeneR failed ***

Removing 'D:/biocbld/work-area/1.8d/tmpdir/Rinst684899743/GeneR'
 ERROR
Installation failed.
Removing 'D:/biocbld/work-area/1.8d/tmpdir/Rinst684899743'