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Command output

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.8d/madman/Rpacks/biomaRt.Rcheck'
* using Version 2.3.0 (2006-04-24)
* checking for file 'biomaRt/DESCRIPTION' ... OK
* this is package 'biomaRt' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'biomaRt' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating biomaRt-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... WARNING
*** Source Errors ***
File /loc/biocbuild/1.8d/madman/Rpacks/biomaRt.Rcheck/biomaRt/doc/prettyOutput.R :
Error in postForm(paste(mart@host, "?", sep = ""), query = xmlQuery) : 
	couldn't connect to host
rm: cannot open directory `/tmp/RtmpbLZkI5/.': Too many open files
* creating biomaRt-manual.tex ... OK
* checking biomaRt-manual.tex ... OK

WARNING: There was 1 warning, see
  /loc/biocbuild/1.8d/madman/Rpacks/biomaRt.Rcheck/00check.log
for details