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Package 84/172OSArchBUILDCHECKBUILD BIN

limma

2.6.2

Gordon Smyth
Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 OK  OK 
Windows Server 2003 x86_64 OK [ OK ] OK 
Package: limma
Version: 2.6.2
Command: D:\biocbld\1.8d\R\bin\R.exe CMD check limma_2.6.2.tar.gz
RetCode: 0
Time: 171.7 seconds
Status: OK
CheckDir: limma.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.8d/Rpacks/limma.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'limma/DESCRIPTION' ... OK
* this is package 'limma' version '2.6.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'limma' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating limma-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/d/biocbld/1.8d/Rpacks/limma.Rcheck/tests'
  Running 'limma-Tests.R'
  Comparing 'limma-Tests.Rout' to 'limma-Tests.Rout.save' ...OK
make[1]: Leaving directory `/cygdrive/d/biocbld/1.8d/Rpacks/limma.Rcheck/tests'
 OK
* checking package vignettes in 'inst/doc' ... OK
* creating limma-manual.tex ... OK
* checking limma-manual.tex ... OK

limma.Rcheck/00install.out:

installing R.css in D:/biocbld/1.8d/Rpacks/limma.Rcheck


---------- Making package limma ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'limma'
     Formats: text html latex example chm 
  01Introduction                    text    html    latex           chm
  02classes                         text    html    latex           chm
  03reading                         text    html    latex           chm
  04Background                      text    html    latex           chm
  05Normalization                   text    html    latex           chm
  06linearmodels                    text    html    latex           chm
  07SingleChannel                   text    html    latex           chm
  08Tests                           text    html    latex           chm
  09Diagnostics                     text    html    latex           chm
  10Other                           text    html    latex           chm
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  classifytests                     text    html    latex   example chm
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  exprset2                          text    html    latex           chm
  fitfdist                          text    html    latex           chm
  fitted.MArrayLM                   text    html    latex           chm
  geneSetTest                       text    html    latex   example chm
  getColClasses                     text    html    latex   example chm
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  isfullrank                        text    html    latex   example chm
  isnumeric                         text    html    latex   example chm
  kooperberg                        text    html    latex   example chm
  limmaUsersGuide                   text    html    latex   example chm
  lm.series                         text    html    latex           chm
  lmFit                             text    html    latex   example chm
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  makeContrasts                     text    html    latex   example chm
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  modelMatrix                       text    html    latex   example chm
  modifyWeights                     text    html    latex   example chm
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  normalizeWithinArrays             text    html    latex   example chm
  normalizebetweenarrays            text    html    latex   example chm
  normalizeprintorder               text    html    latex   example chm
  normalizequantiles                text    html    latex           chm
  normexp                           text    html    latex           chm
  normexpfit                        text    html    latex   example chm
  normexpsignal                     text    html    latex   example chm
  plotDensities                     text    html    latex   example chm
  plotFB                            text    html    latex           chm
  plotma                            text    html    latex   example chm
  plotma3by2                        text    html    latex           chm
  plotprinttiploess                 text    html    latex           chm
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  printHead                         text    html    latex           chm
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  read.maimages                     text    html    latex   example chm
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  residuals.MArrayLM                text    html    latex           chm
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  volcanoplot                       text    html    latex   example chm
  weightedmedian                    text    html    latex   example chm
  writefit                          text    html    latex           chm
  wtVariables                       text    html    latex   example chm
  zscore                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.8d\Rpacks\limma.Rcheck\00_pkg_src\limma\chm\limma.chm


Compile time: 0 minutes, 0 seconds
126	Topics
588	Local links
15	Internet links
1	Graphic


Created d:\biocbld\1.8d\Rpacks\limma.Rcheck\00_pkg_src\limma\chm\limma.chm, 195,391 bytes
Compression decreased file by 299,341 bytes.
  preparing package limma for lazy loading
  adding MD5 sums

* DONE (limma)