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limma

2.6.2

Gordon Smyth
Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 OK  OK 
Windows Server 2003 x86_64[ OK ] OK  OK 
Package: limma
Version: 2.6.2
Command: D:\biocbld\1.8d\R\bin\R.exe CMD build limma
RetCode: 0
Time: 39.2 seconds
Status: OK
PackageFile: limma_2.6.2.tar.gz

Command output

* checking for file 'limma/DESCRIPTION' ... OK
* preparing 'limma':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/1.8d/tmpdir/Rinst761682867


---------- Making package limma ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'limma'
     Formats: text html latex example chm 
  01Introduction                    text    html    latex           chm
  02classes                         text    html    latex           chm
  03reading                         text    html    latex           chm
  04Background                      text    html    latex           chm
  05Normalization                   text    html    latex           chm
  06linearmodels                    text    html    latex           chm
  07SingleChannel                   text    html    latex           chm
  08Tests                           text    html    latex           chm
  09Diagnostics                     text    html    latex           chm
  10Other                           text    html    latex           chm
  LargeDataObject                   text    html    latex   example chm
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  anova-method                      text    html    latex           chm
  arrayWeights                      text    html    latex   example chm
  arrayWeightsQuick                 text    html    latex   example chm
  asMatrixWeights                   text    html    latex   example chm
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  asmalist                          text    html    latex           chm
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  bwss                              text    html    latex           chm
  bwss.matrix                       text    html    latex           chm
  cbind                             text    html    latex   example chm
  changelog                         text    html    latex           chm
  channel2M                         text    html    latex   example chm
  classifytests                     text    html    latex   example chm
  contrasts.fit                     text    html    latex   example chm
  controlStatus                     text    html    latex   example chm
  convest                           text    html    latex   example chm
  decideTests                       text    html    latex           chm
  dim                               text    html    latex   example chm
  dimnames                          text    html    latex           chm
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  ebayes                            text    html    latex   example chm
  exprset2                          text    html    latex           chm
  fitfdist                          text    html    latex           chm
  fitted.MArrayLM                   text    html    latex           chm
  geneSetTest                       text    html    latex   example chm
  getColClasses                     text    html    latex   example chm
  getSpacing                        text    html    latex   example chm
  getlayout                         text    html    latex   example chm
  gls.series                        text    html    latex           chm
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  heatdiagram                       text    html    latex   example chm
  helpMethods                       text    html    latex   example chm
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  intraspotCorrelation              text    html    latex   example chm
  isfullrank                        text    html    latex   example chm
  isnumeric                         text    html    latex   example chm
  kooperberg                        text    html    latex   example chm
  limmaUsersGuide                   text    html    latex   example chm
  lm.series                         text    html    latex           chm
  lmFit                             text    html    latex   example chm
  lmscFit                           text    html    latex   example chm
  loessfit                          text    html    latex   example chm
  m.spot                            text    html    latex           chm
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  makeContrasts                     text    html    latex   example chm
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  mdplot                            text    html    latex           chm
  merge                             text    html    latex   example chm
  modelMatrix                       text    html    latex   example chm
  modifyWeights                     text    html    latex   example chm
  mrlm                              text    html    latex           chm
  normalizeMedianAbsValues          text    html    latex   example chm
  normalizeRobustSpline             text    html    latex   example chm
  normalizeWithinArrays             text    html    latex   example chm
  normalizebetweenarrays            text    html    latex   example chm
  normalizeprintorder               text    html    latex   example chm
  normalizequantiles                text    html    latex           chm
  normexp                           text    html    latex           chm
  normexpfit                        text    html    latex   example chm
  normexpsignal                     text    html    latex   example chm
  plotDensities                     text    html    latex   example chm
  plotFB                            text    html    latex           chm
  plotma                            text    html    latex   example chm
  plotma3by2                        text    html    latex           chm
  plotprinttiploess                 text    html    latex           chm
  poolvar                           text    html    latex   example chm
  printHead                         text    html    latex           chm
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  protectMetachar                   text    html    latex   example chm
  qqt                               text    html    latex   example chm
  qualwt                            text    html    latex   example chm
  read.maimages                     text    html    latex   example chm
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  readGPRHeader                     text    html    latex           chm
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  residuals.MArrayLM                text    html    latex           chm
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  subsetting                        text    html    latex   example chm
  summary                           text    html    latex           chm
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  tmixture                          text    html    latex           chm
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  venn                              text    html    latex   example chm
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  weightedmedian                    text    html    latex   example chm
  writefit                          text    html    latex           chm
  wtVariables                       text    html    latex   example chm
  zscore                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\1.8d\Rpacks\limma\chm\limma.chm





Compile time: 0 minutes, 0 seconds

126	Topics

588	Local links

15	Internet links

1	Graphic





Created d:\biocbld\1.8d\Rpacks\limma\chm\limma.chm, 195,393 bytes

Compression decreased file by 299,339 bytes.

  preparing package limma for lazy loading
  adding MD5 sums

* DONE (limma)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'limma_2.6.2.tar.gz'