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Package 21/172OSArchBUILDCHECKBUILD BIN

beadarray

1.0.0

Mark Dunning
Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64 OK  OK 
Windows Server 2003 x86_64 OK [ OK ] OK 
Package: beadarray
Version: 1.0.0
Command: D:\biocbld\1.8d\R\bin\R.exe CMD check beadarray_1.0.0.tar.gz
RetCode: 0
Time: 158.8 seconds
Status: OK
CheckDir: beadarray.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.8d/Rpacks/beadarray.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'beadarray/DESCRIPTION' ... OK
* this is package 'beadarray' version '1.0.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'beadarray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* creating beadarray-Ex.R ... OK
* checking examples ... OK
* creating beadarray-manual.tex ... OK
* checking beadarray-manual.tex ... OK

beadarray.Rcheck/00install.out:

installing R.css in D:/biocbld/1.8d/Rpacks/beadarray.Rcheck


---------- Making package beadarray ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making findProbeIndices.d from findProbeIndices.c
gcc   -Id:/biocbld/1.8d/R/include -Wall -O2   -c findProbeIndices.c -o findProbeIndices.o
windres --include-dir d:/biocbld/1.8d/R/include  -i beadarray_res.rc -o beadarray_res.o
gcc  -shared -s  -o beadarray.dll beadarray.def findProbeIndices.o beadarray_res.o  -Ld:/biocbld/1.8d/R/bin   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
There were 29 warnings (use warnings() to see them)
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'beadarray'
     Formats: text html latex example chm 
  BLData                            text    html    latex           chm
  BSData                            text    html    latex           chm
  BeadLevelList                     text    html    latex           chm
  BeadSummaryList                   text    html    latex           chm
  LargeDataObject                   text    html    latex   example chm
  backgroundCorrectBeads            text    html    latex   example chm
  biotin_controls                   text    html    latex           chm
  cbind                             text    html    latex           chm
  checkRandomness                   text    html    latex   example chm
  createBeadSummaryData             text    html    latex   example chm
  cy3_controls                      text    html    latex           chm
  dim                               text    html    latex           chm
  dimnames                          text    html    latex           chm
  displayTIFFImage                  text    html    latex   example chm
  findAllOutliers                   text    html    latex   example chm
  findBeadStatus                    text    html    latex   example chm
  findHighestChis                   text    html    latex   example chm
  findHighestSD                     text    html    latex   example chm
  findLowestCounts                  text    html    latex   example chm
  findMostOutliers                  text    html    latex   example chm
  getDimensions                     text    html    latex   example chm
  getMeanIntensities                text    html    latex   example chm
  getProbeCoords                    text    html    latex   example chm
  getProbeIDs                       text    html    latex   example chm
  getProbeInfo                      text    html    latex           chm
  getProbeIntensities               text    html    latex   example chm
  getUnregisteredBeads              text    html    latex   example chm
  histBeadCounts                    text    html    latex   example chm
  housekeeping_controls             text    html    latex           chm
  hs_controls                       text    html    latex           chm
  labelling_controls                text    html    latex           chm
  ls_controls                       text    html    latex           chm
  matrix.mean                       text    html    latex           chm
  medianNormalise                   text    html    latex   example chm
  neg_controls                      text    html    latex           chm
  other_controls                    text    html    latex           chm
  pairwiseMA                        text    html    latex   example chm
  plotArray                         text    html    latex           chm
  plotBeadIntensities               text    html    latex   example chm
  plotBeadLocations                 text    html    latex   example chm
  plotCluster                       text    html    latex           chm
  plotDistances                     text    html    latex   example chm
  plotMA.beads                      text    html    latex           chm
  plotMAXY                          text    html    latex   example chm
  plotOnSAM                         text    html    latex           chm
  plotProbeDistances                text    html    latex   example chm
  plotProbeVariation                text    html    latex           chm
  plotXY.beads                      text    html    latex           chm
  probeDiagnostics                  text    html    latex   example chm
  qsplineNormalise                  text    html    latex   example chm
  quantileNormalise                 text    html    latex   example chm
  readBeadImages                    text    html    latex   example chm
  readBeadSummaryData               text    html    latex   example chm
  readBeadSummaryTargets            text    html    latex   example chm
  readBeadTargets                   text    html    latex   example chm
  readNonXYData                     text    html    latex   example chm
  readProbeInfo                     text    html    latex           chm
  removeArrays                      text    html    latex   example chm
  subsetting                        text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.8d\Rpacks\beadarray.Rcheck\00_pkg_src\beadarray\chm\beadarray.chm


Compile time: 0 minutes, 0 seconds
60	Topics
167	Local links
0	Internet links
1	Graphic


Created d:\biocbld\1.8d\Rpacks\beadarray.Rcheck\00_pkg_src\beadarray\chm\beadarray.chm, 71,719 bytes
Compression decreased file by 95,364 bytes.
  preparing package beadarray for lazy loading
  adding MD5 sums

* DONE (beadarray)