Package: affxparser

Version: 1.4.1

Command: D:\biocbld\1.8d\R\bin\R.exe CMD check affxparser_1.4.1.tar.gz

RetCode: 0

Time: 165.4 seconds

Status: OK

CheckDir: affxparser.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.8d/Rpacks/affxparser.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'affxparser/DESCRIPTION' ... OK
* this is package 'affxparser' version '1.4.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affxparser' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* creating affxparser-Ex.R ... OK
* checking examples ... OK
* creating affxparser-manual.tex ... OK
* checking affxparser-manual.tex ... OK

installing R.css in D:/biocbld/1.8d/Rpacks/affxparser.Rcheck


---------- Making package affxparser ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making R_affx_cdf_extras.d from R_affx_cdf_extras.cpp
making R_affx_cdf_parser.d from R_affx_cdf_parser.cpp
making R_affx_cel_parser.d from R_affx_cel_parser.cpp
making R_affx_test_cmd_line.d from R_affx_test_cmd_line.cpp
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/file/BARFileData.cpp -o fusion_sdk/file/BARFileData.o
In file included from fusion_sdk/file/BARFileData.cpp:21:
fusion_sdk/file/BARFileData.h:30: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = TagValuePairType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::__uninitialized_fill_n_aux(_ForwardIterator, _Size, const _Tp&, __false_type) [with _ForwardIterator = affxbar::CGDACSequenceResultItem*, _Size = unsigned int, _Tp = affxbar::CGDACSequenceResultItem]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::__uninitialized_fill_n_aux(_ForwardIterator, _Size, const _Tp&, __false_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >, _Size = unsigned int, _Tp = affxbar::CGDACSequenceResultItem]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = TagValuePairType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = affxbar::CGDACSequenceResultItem, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/file/BPMAPFileData.cpp -o fusion_sdk/file/BPMAPFileData.o
In file included from fusion_sdk/file/BPMAPFileData.cpp:21:
fusion_sdk/file/BPMAPFileData.h:30: warning: ignoring #pragma warning 
fusion_sdk/file/BPMAPFileData.cpp: In member function `bool affxbpmap::CBPMAPFileData::ReadDataSection()':
fusion_sdk/file/BPMAPFileData.cpp:370: warning: unused variable 'probeIn'
fusion_sdk/file/BPMAPFileData.cpp:371: warning: unused variable 'probeOut'
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affxbpmap::CGDACSequenceItem::CGDACSequenceItem(const affxbpmap::CGDACSequenceItem&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = TagValuePairType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = TagValuePairType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affxbpmap::GDACSequenceHitItemType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = affxbpmap::CGDACSequenceItem, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/file/CDFFileData.cpp -o fusion_sdk/file/CDFFileData.o
In file included from fusion_sdk/file/CDFFileData.cpp:28:
fusion_sdk/file/CDFFileData.h:31: warning: ignoring #pragma warning 
fusion_sdk/file/CDFFileData.cpp:36: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = std::string, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = affxcdf::CCDFQCProbeSetInformation, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affxcdf::CCDFProbeGroupInformation, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::__uninitialized_fill_n_aux(_ForwardIterator, _Size, const _Tp&, __false_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >, _Size = unsigned int, _Tp = affxcdf::CCDFProbeSetInformation]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::__uninitialized_fill_n_aux(_ForwardIterator, _Size, const _Tp&, __false_type) [with _ForwardIterator = affxcdf::CCDFProbeSetInformation*, _Size = unsigned int, _Tp = affxcdf::CCDFProbeSetInformation]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = affxcdf::CCDFProbeSetInformation, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = affxcdf::CCDFProbeGroupInformation, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/file/CELFileData.cpp -o fusion_sdk/file/CELFileData.o
fusion_sdk/file/CELFileData.cpp:33: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/file/CHPFileData.cpp -o fusion_sdk/file/CHPFileData.o
In file included from fusion_sdk/file/CHPFileData.cpp:21:
fusion_sdk/file/CHPFileData.h:30: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `void affxchp::CCHPFileHeader::ParseString(TagValuePairTypeList&, std::string, std::string, std::string)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `bool affxchp::CCHPFileData::Open(bool)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/file/EXPFileData.cpp -o fusion_sdk/file/EXPFileData.o
fusion_sdk/file/EXPFileData.cpp:28: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `bool affxexp::CEXPFileData::Read()':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/file/FileIO.cpp -o fusion_sdk/file/FileIO.o
fusion_sdk/file/FileIO.cpp:32: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/file/GRCFileData.cpp -o fusion_sdk/file/GRCFileData.o
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/file/MSKFileData.cpp -o fusion_sdk/file/MSKFileData.o
fusion_sdk/file/MSKFileData.cpp:29: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `bool affxmsk::CMSKFileData::Read()':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/file/PSIFileData.cpp -o fusion_sdk/file/PSIFileData.o
fusion_sdk/file/PSIFileData.cpp:28: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = affxpsi::ProbeSetInfo, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/gcast/src/GridControlData.cpp -o fusion_sdk/gcast/src/GridControlData.o
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/array/src/ArrayAttributes.cpp -o fusion_sdk/calvin_files/array/src/ArrayAttributes.o
In file included from fusion_sdk/calvin_files/array/src/ArrayAttributes.h:28,
                 from fusion_sdk/calvin_files/array/src/ArrayAttributes.cpp:21:
fusion_sdk/calvin_files/parameter/src/Parameter.h:34: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/array/src/ArrayAudit.cpp -o fusion_sdk/calvin_files/array/src/ArrayAudit.o
In file included from fusion_sdk/calvin_files/array/src/ArrayAudit.h:29,
                 from fusion_sdk/calvin_files/array/src/ArrayAudit.cpp:21:
fusion_sdk/calvin_files/parameter/src/Parameter.h:34: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/array/src/ArrayData.cpp -o fusion_sdk/calvin_files/array/src/ArrayData.o
In file included from fusion_sdk/calvin_files/array/src/ArrayData.h:30,
                 from fusion_sdk/calvin_files/array/src/ArrayData.cpp:21:
fusion_sdk/calvin_files/parameter/src/Parameter.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/array/src/ArrayData.h:31,
                 from fusion_sdk/calvin_files/array/src/ArrayData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValuePair, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/CDFData.cpp -o fusion_sdk/calvin_files/data/src/CDFData.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::DataSetHeader::DataSetHeader(const affymetrix_calvin_io::DataSetHeader&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void affymetrix_calvin_io::CDFProbeSetInformation::SetDataGroup(affymetrix_calvin_io::DataGroup&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/CELData.cpp -o fusion_sdk/calvin_files/data/src/CELData.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/CELData.h:34: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetIntensities(int32_t, int32_t, FloatVector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:427: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp:431: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetStdev(int32_t, int32_t, FloatVector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:445: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetNumPixels(int32_t, int32_t, Int16Vector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:459: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp -o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:24,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:24,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:24,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:24,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:24,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:24,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:24,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:24,
                 from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp:21:
fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:30: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/CHPData.cpp -o fusion_sdk/calvin_files/data/src/CHPData.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/data/src/CHPData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/data/src/CHPData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/data/src/CHPData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/data/src/CHPData.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/data/src/CHPData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/data/src/CHPData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/data/src/CHPData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/data/src/CHPData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:30,
                 from fusion_sdk/calvin_files/data/src/CHPData.cpp:21:
fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:30: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:31,
                 from fusion_sdk/calvin_files/data/src/CHPData.cpp:21:
fusion_sdk/calvin_files/data/src/CHPUniversalEntry.h:28: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:33,
                 from fusion_sdk/calvin_files/data/src/CHPData.cpp:21:
fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.h:28: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::DataSetHeader::DataSetHeader(const affymetrix_calvin_io::DataSetHeader&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/CHPExpressionEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o
In file included from fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.cpp:21:
fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.h:28: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/CHPUniversalEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o
In file included from fusion_sdk/calvin_files/data/src/CHPUniversalEntry.cpp:21:
fusion_sdk/calvin_files/data/src/CHPUniversalEntry.h:28: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/DATData.cpp -o fusion_sdk/calvin_files/data/src/DATData.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/data/src/DATData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/data/src/DATData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/data/src/DATData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/data/src/DATData.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/data/src/DATData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/data/src/DATData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/data/src/DATData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/data/src/DATData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DATData.cpp:21:
fusion_sdk/calvin_files/data/src/DATData.h:33: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/DATData.cpp: In member function `bool affymetrix_calvin_io::DATData::GetPixels(u_int16_t*, u_int32_t, u_int32_t, u_int32_t, u_int32_t)':
fusion_sdk/calvin_files/data/src/DATData.cpp:378: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/DATData.cpp:381: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/DATData.cpp:384: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/DATData.cpp:494:2: warning: no newline at end of file
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/DataGroup.cpp -o fusion_sdk/calvin_files/data/src/DataGroup.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/DataGroup.h: In constructor `affymetrix_calvin_io::DataGroup::DataGroup(const std::string&, const affymetrix_calvin_io::DataGroupHeader&, void*, bool)':
fusion_sdk/calvin_files/data/src/DataGroup.h:101: warning: `affymetrix_calvin_io::DataGroup::fileStream' will be initialized after
fusion_sdk/calvin_files/data/src/DataGroup.h:97: warning:   `bool affymetrix_calvin_io::DataGroup::useMemoryMapping'
fusion_sdk/calvin_files/data/src/DataGroup.cpp:35: warning:   when initialized here
fusion_sdk/calvin_files/data/src/DataGroup.h: In constructor `affymetrix_calvin_io::DataGroup::DataGroup(const std::string&, const affymetrix_calvin_io::DataGroupHeader&, std::ifstream&, bool)':
fusion_sdk/calvin_files/data/src/DataGroup.h:101: warning: `affymetrix_calvin_io::DataGroup::fileStream' will be initialized after
fusion_sdk/calvin_files/data/src/DataGroup.h:97: warning:   `bool affymetrix_calvin_io::DataGroup::useMemoryMapping'
fusion_sdk/calvin_files/data/src/DataGroup.cpp:43: warning:   when initialized here
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >, _ForwardIterator = affymetrix_calvin_io::DataSetHeader*]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp -o fusion_sdk/calvin_files/data/src/DataGroupHeader.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::DataSetHeader::DataSetHeader(const affymetrix_calvin_io::DataSetHeader&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::ColumnInfo, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/DataSet.cpp -o fusion_sdk/calvin_files/data/src/DataSet.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:29,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:22:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::ColumnInfo, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = std::string, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator >, size_t, const _Tp&) [with _Tp = std::wstring, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/DataSetHeader.cpp -o fusion_sdk/calvin_files/data/src/DataSetHeader.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:22:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/FileHeader.cpp -o fusion_sdk/calvin_files/data/src/FileHeader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >, _ForwardIterator = affymetrix_calvin_io::GenericDataHeader*]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::GenericDataHeader, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::DataGroupHeader::DataGroupHeader(const affymetrix_calvin_io::DataGroupHeader&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::ColumnInfo, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::DataSetHeader, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/GenericData.cpp -o fusion_sdk/calvin_files/data/src/GenericData.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.cpp:23:
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:35: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp -o fusion_sdk/calvin_files/data/src/GenericDataHeader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp:22:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp:22:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::GenericDataHeader, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::GenericDataHeader::GenericDataHeader(const affymetrix_calvin_io::GenericDataHeader&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp -o fusion_sdk/calvin_files/exception/src/ExceptionBase.o
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/file/CDFFileData.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:22:
fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:23:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:23:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:23:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:23:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp: In member function `char affymetrix_fusion_io::FusionCDFProbeInformation::GetPBase() const':
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:420: warning: converting to non-pointer type `char' from NULL
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp: In member function `char affymetrix_fusion_io::FusionCDFProbeInformation::GetTBase() const':
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:433: warning: converting to non-pointer type `char' from NULL
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp:21:
fusion_sdk/file/CDFFileData.h:31: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCELData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionTagValuePairType.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/fusion/src/FusionCELData.h:36: warning: `class affymetrix_fusion_io::FusionCELData' has virtual functions but non-virtual destructor
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:23:
fusion_sdk/calvin_files/data/src/CELData.h:34: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:22:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:22:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/FusionGrcFileReader.cpp -o fusion_sdk/calvin_files/fusion/src/FusionGrcFileReader.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionGrcFileReader.cpp:23:
fusion_sdk/calvin_files/parsers/src/GridControlFileReader.h:36: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp -o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:21:
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h:28: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:22:
fusion_sdk/file/CHPFileData.h:30: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionTagValuePairType.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `virtual void affymetrix_fusion_io::GCOSCELDataAdapter::GetParameters(affymetrix_fusion_io::FusionTagValuePairTypeList&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:31,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
fusion_sdk/file/CHPFileData.h:30: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:30: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/CHPUniversalEntry.h:28: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:33,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.h:28: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:35,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h:28: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:396:2: warning: no newline at end of file
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In function `void affymetrix_fusion_io::ConvertFusion(affymetrix_fusion_io::FusionTagValuePairTypeList&, TagValuePairTypeList&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In function `void affymetrix_fusion_io::ConvertGCOS(TagValuePairTypeList&, affymetrix_fusion_io::FusionTagValuePairTypeList&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionTagValuePairType.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:28,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/CELData.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:23:
fusion_sdk/calvin_files/parsers/src/CelFileReader.h:35: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `virtual void affymetrix_fusion_io::CalvinCELDataAdapter::GetParameters(affymetrix_fusion_io::FusionTagValuePairTypeList&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:31,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/file/CHPFileData.h:30: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:30: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/CHPUniversalEntry.h:28: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:33,
                 from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:32,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.h:28: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:35,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h:28: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:29,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:30,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:29,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:30,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:29,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:30,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:30,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:34: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `std::list<_Tp, _Alloc>& std::list<_Tp, _Alloc>::operator=(const std::list<_Tp, _Alloc>&) [with _Tp = affymetrix_fusion_io::FusionTagValuePairType, _Alloc = std::allocator]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `affymetrix_fusion_io::FusionTagValuePairTypeList affymetrix_fusion_io::CalvinCHPHeaderAdapter::Convert(affymetrix_calvin_parameter::ParameterNameValueTypeVector&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp -o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o
In file included from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:25: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h: In constructor `affymetrix_calvin_parameter::ParameterNameValueType::ParameterNameValueType(const std::wstring&, const void*, int32_t, const std::wstring&)':
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:345: warning: `affymetrix_calvin_parameter::ParameterNameValueType::Value' will be initialized after
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:342: warning:   `std::wstring affymetrix_calvin_parameter::ParameterNameValueType::Type'
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:130: warning:   when initialized here
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h: In constructor `affymetrix_calvin_parameter::ParameterNameValueType::ParameterNameValueType(const std::wstring&, const affymetrix_calvin_parameter::MIMEValue&, const std::wstring&)':
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:345: warning: `affymetrix_calvin_parameter::ParameterNameValueType::Value' will be initialized after
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:342: warning:   `std::wstring affymetrix_calvin_parameter::ParameterNameValueType::Type'
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:138: warning:   when initialized here
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp: In member function `std::wstring affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType::DefaultToString()':
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:444: warning: enumeration value `UnknownType' not handled in switch
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp: In member function `std::wstring affymetrix_calvin_parameter::ParameterNameValueType::ToString() const':
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:399: warning: enumeration value `UnknownType' not handled in switch
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType::operator=(const affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/AuditFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/AuditFileReader.o
In file included from fusion_sdk/calvin_files/array/src/ArrayAudit.h:29,
                 from fusion_sdk/calvin_files/parsers/src/AuditFileReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/AuditFileReader.cpp:22:
fusion_sdk/calvin_files/parameter/src/Parameter.h:34: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `bool affymetrix_calvin_io::AuditFileReader::Read(const std::string&, affymetrix_calvin_array::ArrayAuditEntryList&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:22:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:30: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:31,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/CHPUniversalEntry.h:28: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:33,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.h:28: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:29,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:29,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:29,
                 from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CelFileReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/CELData.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/CelFileReader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:22:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/DATFileReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DATData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DATFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DATData.h:33: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.h:29,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.h:29,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DATFileReader.h:29,
                 from fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DATFileReader.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:35: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp: In member function `void affymetrix_calvin_io::DataGroupHeaderReader::ReadNextDataGroupFilePos(std::ifstream&, affymetrix_calvin_io::DataGroupHeader&)':
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:122: warning: unused variable 'z'
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp: In member function `void affymetrix_calvin_io::DataGroupHeaderReader::ReadFirstDataSetFilePos(std::ifstream&, affymetrix_calvin_io::DataGroupHeader&)':
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:133: warning: unused variable 'z'
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp: In member function `u_int32_t affymetrix_calvin_io::DataGroupHeaderReader::ReadDataSetCnt(std::ifstream&, affymetrix_calvin_io::DataGroupHeader&)':
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:144: warning: unused variable 'z'
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp: In member function `void affymetrix_calvin_io::DataGroupHeaderReader::ReadDataGroupName(std::ifstream&, affymetrix_calvin_io::DataGroupHeader&)':
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:155: warning: unused variable 'z'
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:35: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp: In member function `void affymetrix_calvin_io::DataSetHeaderReader::ReadParameters(std::ifstream&, affymetrix_calvin_io::DataSetHeader&)':
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:160: warning: deleting `const void*' is undefined
fusion_sdk/calvin_files/data/src/BitFlag.h: At global scope:
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetReader.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h:31: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/FileInput.cpp -o fusion_sdk/calvin_files/parsers/src/FileInput.o
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:27: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h:31: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp: In member function `void affymetrix_calvin_io::GenericDataHeaderReader::Read(affymetrix_calvin_io::GenericDataHeader&)':
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:63: warning: deleting `const void*' is undefined
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:23:
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:35: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/GridControlFileReader.o
In file included from fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/GridControlFileReader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp:23:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp:23:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp:23:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp:23:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp:23:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp:23:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp:23:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp:23:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp:23:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp:23:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp:23:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp:23:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp:24:
fusion_sdk/calvin_files/parameter/src/Parameter.h:34: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/TextFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/TextFileReader.o
In file included from fusion_sdk/calvin_files/parsers/src/TextFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/TextFileReader.h:33: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp -o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:29: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp: In function `void InitializeRandomNumberGenerator()':
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:50: warning: cast from pointer to integer of different size
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp: In constructor `affymetrix_calvin_utilities::AffymetrixGuid::AffymetrixGuid()':
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:66: warning: unused variable 'nResult'
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/utils/src/DateTime.cpp -o fusion_sdk/calvin_files/utils/src/DateTime.o
fusion_sdk/calvin_files/utils/src/DateTime.cpp:33: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/utils/src/DateTime.cpp: In static member function `static affymetrix_calvin_utilities::DateTime affymetrix_calvin_utilities::DateTime::Parse(std::wstring)':
fusion_sdk/calvin_files/utils/src/DateTime.cpp:160: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/utils/src/DateTime.cpp:172: warning: comparison between signed and unsigned integer expressions
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/utils/src/FileUtils.cpp -o fusion_sdk/calvin_files/utils/src/FileUtils.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In static member function `static std::list > affymetrix_calvin_utilities::FileUtils::ListFiles(const char*, const char*)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/utils/src/StringUtils.cpp -o fusion_sdk/calvin_files/utils/src/StringUtils.o
fusion_sdk/calvin_files/utils/src/StringUtils.cpp:27: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c fusion_sdk/calvin_files/utils/src/checksum.cpp -o fusion_sdk/calvin_files/utils/src/checksum.o
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c R_affx_cel_parser.cpp -o R_affx_cel_parser.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionTagValuePairType.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/fusion/src/FusionCELData.h:36: warning: `class affymetrix_fusion_io::FusionCELData' has virtual functions but non-virtual destructor
In file included from d:/biocbld/1.8d/R/include/R.h:49,
                 from R_affx_cel_parser.cpp:10:
d:/biocbld/1.8d/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/windows.h:52,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:35,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/wingdi.h:313:1: warning: this is the location of the previous definition
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c R_affx_cdf_parser.cpp -o R_affx_cdf_parser.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/file/CDFFileData.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
In file included from d:/biocbld/1.8d/R/include/R.h:49,
                 from R_affx_cdf_parser.cpp:9:
d:/biocbld/1.8d/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/windows.h:52,
                 from fusion_sdk/file/CDFFileData.h:32,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_parser.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/wingdi.h:313:1: warning: this is the location of the previous definition
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -Id:/biocbld/1.8d/R/include -Wall -O2   -c R_affx_cdf_extras.cpp -o R_affx_cdf_extras.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/file/CDFFileData.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:33,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/BitFlag.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:135:2: warning: "/*" within comment
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
In file included from d:/biocbld/1.8d/R/include/R.h:49,
                 from R_affx_cdf_extras.cpp:9:
d:/biocbld/1.8d/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/windows.h:52,
                 from fusion_sdk/file/CDFFileData.h:32,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_extras.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/wingdi.h:313:1: warning: this is the location of the previous definition
fusion_sdk/calvin_files/data/src/BitFlag.h:35: warning: 'affymetrix_calvin_io::DEFAULT_DATA_SET_HDR_FLAG' defined but not used
windres --include-dir d:/biocbld/1.8d/R/include  -i affxparser_res.rc -o affxparser_res.o
g++  -shared -s  -o affxparser.dll affxparser.def fusion_sdk/file/BARFileData.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/EXPFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/GRCFileData.o fusion_sdk/file/MSKFileData.o fusion_sdk/file/PSIFileData.o fusion_sdk/gcast/src/GridControlData.o fusion_sdk/calvin_files/array/src/ArrayAttributes.o fusion_sdk/calvin_files/array/src/ArrayAudit.o fusion_sdk/calvin_files/array/src/ArrayData.o fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_files/data/src/DATData.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionGrcFileReader.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/AuditFileReader.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/DATFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/parsers/src/GridControlFileReader.o fusion_sdk/calvin_files/parsers/src/TextFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o affxparser_res.o  -Ld:/biocbld/1.8d/R/bin -lws2_32  -lR
  ... DLL made
  installing DLL
  installing R files
  save image
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'affxparser'
     Formats: text html latex example chm 
  affxparser-package                text    html    latex           chm
  affxparserInfo                    text    html    latex   example chm
  applyCdfGroups                    text    html    latex   example chm
  cdfAddBaseMmCounts                text    html    latex           chm
  cdfAddProbeOffsets                text    html    latex           chm
  cdfGetFields                      text    html    latex           chm
  cdfGtypeCelToPQ                   text    html    latex           chm
  cdfMergeStrands                   text    html    latex           chm
  cdfMergeToQuartets                text    html    latex           chm
  cellindexmaps                     text    html    latex           chm
  cellxy                            text    html    latex           chm
  findCdf                           text    html    latex   example chm
  findFiles                         text    html    latex           chm
  invertMap                         text    html    latex   example chm
  read.affybatch2                   text    html    latex   example chm
  readCdf                           text    html    latex           chm
  readCdfCellIndices                text    html    latex           chm
  readCdfGroupNames                 text    html    latex           chm
  readCdfHeader                     text    html    latex   example chm
  readCdfIsPm                       text    html    latex           chm
  readCdfNbrOfCellsPerUnitGroup     text    html    latex   example chm
  readCdfUnitNames                  text    html    latex   example chm
  readCdfUnits                      text    html    latex   example chm
  readCdfUnitsWriteMap              text    html    latex   example chm
  readCel                           text    html    latex   example chm
  readCelHeader                     text    html    latex   example chm
  readCelIntensities                text    html    latex   example chm
  readCelRectangle                  text    html    latex   example chm
  readCelUnits                      text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.8d\Rpacks\affxparser.Rcheck\00_pkg_src\affxparser\chm\affxparser.chm


Compile time: 0 minutes, 0 seconds
30	Topics
121	Local links
32	Internet links
1	Graphic


Created d:\biocbld\1.8d\Rpacks\affxparser.Rcheck\00_pkg_src\affxparser\chm\affxparser.chm, 68,429 bytes
Compression decreased file by 81,788 bytes.
  preparing package affxparser for lazy loading
  adding MD5 sums

* DONE (affxparser)