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Package 150/172OSArchBUILDCHECKBUILD BIN

ScISI

1.2.0

Tony Chiang
Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc ERROR skipped
Linux (SUSE 10.0) x86_64 OK  OK 
Windows Server 2003 x86_64 OK [ OK ] OK 
Package: ScISI
Version: 1.2.0
Command: D:\biocbld\1.8d\R\bin\R.exe CMD check ScISI_1.2.0.tar.gz
RetCode: 0
Time: 397.2 seconds
Status: OK
CheckDir: ScISI.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.8d/Rpacks/ScISI.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'ScISI/DESCRIPTION' ... OK
* this is package 'ScISI' version '1.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ScISI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ScISI-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ScISI-manual.tex ... OK
* checking ScISI-manual.tex ... OK

ScISI.Rcheck/00install.out:

installing R.css in D:/biocbld/1.8d/Rpacks/ScISI.Rcheck


---------- Making package ScISI ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
Warning messages:
1: incomplete final line found by readLines on './man/compBijection.Rd' 
2: incomplete final line found by readLines on './man/compareComplex.Rd' 
3: incomplete final line found by readLines on './man/getLocOrfs.Rd' 
4: incomplete final line found by readLines on './man/rmByEvi.Rd' 
5: incomplete final line found by readLines on './man/runAlignment.Rd' 
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'ScISI'
     Formats: text html latex example chm 
  Desc-methods                      text    html    latex           chm
  ID-methods                        text    html    latex           chm
  JaccardCoef                       text    html    latex   example chm
  ScISI                             text    html    latex   example chm
  ScISI2html                        text    html    latex   example chm
  ScISIverified                     text    html    latex   example chm
  arp23                             text    html    latex   example chm
  arp23G                            text    html    latex   example chm
  arp23Orf                          text    html    latex   example chm
  arp23Y2HG                         text    html    latex   example chm
  calcGraphStats                    text    html    latex   example chm
  cfia                              text    html    latex   example chm
  cfiaOrf                           text    html    latex   example chm
  checkComplex                      text    html    latex   example chm
  checkSGN                          text    html    latex   example chm
  compBijection                     text    html    latex   example chm
  compareComplex                    text    html    latex   example chm
  createGODataFrame                 text    html    latex   example chm
  createGOMatrix                    text    html    latex   example chm
  createMipsDataFrame               text    html    latex   example chm
  createMipsMatrix                  text    html    latex   example chm
  createYeastDataObj                text    html    latex   example chm
  dataS                             text    html    latex   example chm
  eAt                               text    html    latex   example chm
  eAt2                              text    html    latex   example chm
  edgeProp                          text    html    latex   example chm
  egEBI16112                        text    html    latex   example chm
  expStats                          text    html    latex   example chm
  findSubComp                       text    html    latex   example chm
  gavin2mergeMG                     text    html    latex   example chm
  getAPMSData                       text    html    latex   example chm
  getGOInfo                         text    html    latex   example chm
  getLocOrfs                        text    html    latex   example chm
  getMipsInfo                       text    html    latex   example chm
  getURL-methods                    text    html    latex           chm
  graphSumStats                     text    html    latex   example chm
  ho2mergeMGG                       text    html    latex   example chm
  krogan2mergeMGGH                  text    html    latex   example chm
  locScISI                          text    html    latex   example chm
  mapping2SysG                      text    html    latex   example chm
  mappingG                          text    html    latex   example chm
  maximizeSimilarity                text    html    latex   example chm
  meanDeg                           text    html    latex   example chm
  mergeBGMat                        text    html    latex   example chm
  mips2go                           text    html    latex   example chm
  nAt                               text    html    latex           chm
  nAtMap                            text    html    latex   example chm
  nucComp                           text    html    latex   example chm
  recCompSize                       text    html    latex   example chm
  redundantM                        text    html    latex   example chm
  rmByEvi                           text    html    latex   example chm
  runAlignment                      text    html    latex   example chm
  runCompareComplex                 text    html    latex   example chm
  subCompM                          text    html    latex   example chm
  sumStats                          text    html    latex   example chm
  unWantedComp                      text    html    latex   example chm
  xtraGO                            text    html    latex   example chm
  xtraGONodes                       text    html    latex   example chm
  yeastData-class                   text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.8d\Rpacks\ScISI.Rcheck\00_pkg_src\ScISI\chm\ScISI.chm


Compile time: 0 minutes, 0 seconds
60	Topics
144	Local links
0	Internet links
1	Graphic


Created d:\biocbld\1.8d\Rpacks\ScISI.Rcheck\00_pkg_src\ScISI\chm\ScISI.chm, 68,325 bytes
Compression decreased file by 82,620 bytes.
  preparing package ScISI for lazy loading

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

  adding MD5 sums

* DONE (ScISI)