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Package 63/172OSArchBUILDCHECKBUILD BIN

GEOquery

1.7.2

Sean Davis
Linux (SUSE 9.2) x86_64 ERROR skipped
Linux (SUSE 9.2) i686 ERROR skipped
Solaris 2.9 sparc ERROR skipped
Linux (SUSE 10.0) x86_64 ERROR skipped
Windows Server 2003 x86_64[ ERROR ]skippedskipped
Package: GEOquery
Version: 1.7.2
Command: D:\biocbld\1.8d\R\bin\R.exe CMD build GEOquery
RetCode: 1
Time: 14.5 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'GEOquery/DESCRIPTION' ... OK
* preparing 'GEOquery':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/1.8d/tmpdir/Rinst708411523


---------- Making package GEOquery ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'GEOquery'
     Formats: text html latex example chm 
  GDS-class                         text    html    latex           chm
  GDS2MA                            text    html    latex   example chm
  GEOData-class                     text    html    latex           chm
     missing link(s):  dataTable-class
  GEODataTable-class                text    html    latex           chm
  GPL-class                         text    html    latex           chm
  GSE-class                         text    html    latex           chm
  GSM-class                         text    html    latex           chm
  getGEO                            text    html    latex   example chm
  getGEOfile                        text    html    latex   example chm
  parseGEO                          text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\1.8d\Rpacks\GEOquery\chm\GEOquery.chm





Compile time: 0 minutes, 0 seconds

11	Topics

49	Local links

1	Internet link

1	Graphic





Created d:\biocbld\1.8d\Rpacks\GEOquery\chm\GEOquery.chm, 28,135 bytes

Compression decreased file by 7,969 bytes.

  adding MD5 sums

* DONE (GEOquery)
* creating vignettes ... ERROR
trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/GDS/GDS1.soft.gz'
ftp data connection made, file length 162393 bytes
opened URL
downloaded 158Kb

trying URL 'http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?targ=self&acc=GSM3&form=text&view=full'
Content type 'geo/text' length unknown
opened URL
downloaded 213Kb

trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/data/geo/by_series/GSE462/GSE462_family.soft.gz'

Error:  chunk 6 
Error in download.file(myurl, destfile, mode = mode) : 
	cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/data/geo/by_series/GSE462/GSE462_family.soft.gz'
Error in buildVignettes(dir = ".") : Error:  chunk 6 
Error in download.file(myurl, destfile, mode = mode) : 
	cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/data/geo/by_series/GSE462/GSE462_family.soft.gz'
Execution halted