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gcrma

2.4.1

Z. Wu
Linux (SUSE 9.2) x86_64 OK  OK 
Linux (SUSE 9.2) i686 OK  OK 
Solaris 2.9 sparc OK  OK 
Linux (SUSE 10.0) x86_64[ OK ] OK 
Windows Server 2003 x86_64 OK  OK  OK 
Package: gcrma
Version: 2.4.1
Command: /home/biocbuild/1.8d/R/bin/R CMD build gcrma
RetCode: 0
Time: 5.5 seconds
Status: OK
PackageFile: gcrma_2.4.1.tar.gz

Command output

* checking for file 'gcrma/DESCRIPTION' ... OK
* preparing 'gcrma':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'gcrma' ...
** libs
gcc -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c baseProfile.c -o baseProfile.o
baseProfile.c: In function 'gcrma_getSeq2':
baseProfile.c:14: warning: unused variable 'nx'
gcc -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c computeAffinities.c -o computeAffinities.o
gcc -I/home/biocbuild/1.8d/R/include -I/home/biocbuild/1.8d/R/include  -I/usr/local/include   -fpic  -g -O2 -std=gnu99 -Wall -c postmean.c -o postmean.o
gcc -shared -L/usr/local/lib64 -o gcrma.so baseProfile.o computeAffinities.o postmean.o   
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio
Loading required package: matchprobes
** help
 >>> Building/Updating help pages for package 'gcrma'
     Formats: text html latex example 
  affinity.spline.coefs             text    html    latex
  bg.adjust.affinities              text    html    latex
  bg.adjust.gcrma                   text    html    latex   example
  bg.parameters.ns                  text    html    latex
  compute.affinities                text    html    latex
  fast.bkg                          text    html    latex
  gcrma                             text    html    latex   example
  gcrma.engine                      text    html    latex   example
  gcrma.engine2                     text    html    latex   example
  getCDF                            text    html    latex
  justGCRMA                         text    html    latex   example
** building package indices ...
* DONE (gcrma)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'gcrma_2.4.1.tar.gz'