* using log directory '/loc/biocbuild/build-area/bioc-1.7/buildSandbox/checkOutput/Biostrings.Rcheck' * using R version 2.2.0, 2005-10-07 * checking for file 'Biostrings/DESCRIPTION' ... OK * this is package 'Biostrings' version '1.4.0' * checking if this is a source package ... OK * checking whether package 'Biostrings' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking package dependencies ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * creating Biostrings-Ex.R ... OK * checking examples ... OK * creating Biostrings-manual.tex ... OK * checking Biostrings-manual.tex ... OK